Os05g0543200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ran GTPase activating protein.
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Os05g0543200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ran GTPase activating protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.2 | 0.195 | 12.2 | 1.14 | 0.303 | 0.627 | 0.4 | 0.25 | 0.304 | 19.9 | 59.33 | 1263 | -- | -- |
| 17.29 | 0.194 | 12.2 | 1.17 | 0.31 | 0.633 | 0.384 | -- | 0.307 | 20 | 58.41 | 1257 | -- | -- |
| 17.66 | 0.196 | 12.2 | 1.13 | 0.29 | 0.601 | -- | 0.214 | 0.306 | 19.6 | 59.73 | 1308 | -- | -- |
| 17.72 | 0.196 | 12.2 | 1.16 | 0.301 | 0.634 | -- | -- | 0.305 | 19.9 | 58.26 | 1268 | -- | -- |
| 21.96 | 0.218 | 12.2 | 1.13 | -- | 0.636 | -- | 0.202 | 0.306 | -- | 60.67 | 1360 | -- | -- |
| 25.68 | 0.238 | 12.2 | 1.14 | 0.311 | -- | 0.36 | -- | 0.267 | 18.6 | -- | -- | -- | -- |
| 26.01 | 0.239 | 12.2 | 1.14 | 0.313 | -- | -- | -- | 0.268 | 18.5 | -- | -- | -- | -- |
| 22.03 | 0.219 | 12.2 | 1.15 | -- | 0.639 | -- | -- | 0.31 | -- | 60.41 | 1359 | -- | -- |
| 52.79 | 0.338 | 12.2 | -- | 0.317 | 0.651 | -- | -- | 0.318 | 19.3 | 59.41 | 8306 | -- | -- |
| 31.09 | 0.261 | 12.2 | 1.13 | -- | -- | -- | -- | 0.261 | -- | -- | -- | -- | -- |
| 60.18 | 0.363 | 12.2 | -- | 0.298 | -- | -- | -- | 0.141 | 18.7 | -- | -- | -- | -- |
| 44.9 | 0.312 | 12.2 | -- | -- | 1.25 | -- | -- | 0.242 | -- | 33.75 | 47520 | -- | -- |
| 64.82 | 0.376 | 12.2 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 2 | 17.24 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 12 | 17.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 17 | 17.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 81 | 17.41 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 94 | 17.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 99 | 17.45 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 104 | 17.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 107 | 17.46 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 112 | 17.47 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 17 |
| 113 | 17.48 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 157 | 17.53 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 161 | 17.53 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 206 | 17.56 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 210 | 17.56 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 224 | 17.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 236 | 17.57 | humidity | 60 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 253 | 17.59 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 282 | 17.61 | humidity | 60 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 298 | 17.62 | humidity | 60 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 302 | 17.63 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 316 | 17.64 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 367 | 17.67 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 383 | 17.68 | humidity | 60 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 425 | 17.72 | humidity | 50 | 1440 | > th | dose dependent | sin | 16 | NA |
| 426 | 17.72 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 567 | 17.83 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 663 | 17.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 683 | 17.94 | humidity | 90 | 1440 | < th | dose dependent | sin | 15 | NA |
| 760 | 18.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 769 | 18.00 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 794 | 18.02 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 795 | 18.02 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 814 | 18.04 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 835 | 18.05 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 853 | 18.05 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 867 | 18.06 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 894 | 18.08 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 921 | 18.09 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |