Os05g0542600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mov34/MPN/PAD-1 family protein.
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Os05g0542600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mov34/MPN/PAD-1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.61 | 0.328 | 10.1 | 1.11 | 0.953 | -0.696 | -0.184 | 0.709 | 0.574 | 2.28 | 10.02 | 1438 | -- | -- |
| 49.61 | 0.328 | 10.1 | 1.03 | 0.983 | -0.674 | -0.12 | -- | 0.571 | 2.15 | 10 | 1396 | -- | -- |
| 48.72 | 0.325 | 10.1 | 1.11 | 0.956 | -0.697 | -- | 0.717 | 0.57 | 2.19 | 10.01 | 1406 | -- | -- |
| 49.59 | 0.328 | 10.1 | 1.05 | 0.979 | -0.687 | -- | -- | 0.556 | 2.21 | 10.03 | 1422 | -- | -- |
| 67.09 | 0.381 | 10 | 0.968 | -- | -0.922 | -- | 1.09 | 0.494 | -- | 10.01 | 353 | -- | -- |
| 62.62 | 0.371 | 10.1 | 0.777 | 0.929 | -- | -0.304 | -- | 0.325 | 2.3 | -- | -- | -- | -- |
| 62.96 | 0.372 | 10.1 | 0.786 | 0.928 | -- | -- | -- | 0.327 | 2.29 | -- | -- | -- | -- |
| 53.13 | 0.339 | 10.1 | 0.965 | -- | -1.76 | -- | -- | 0.462 | -- | 1.09 | 1751 | -- | -- |
| 69.25 | 0.388 | 10.1 | -- | 0.868 | -0.648 | -- | -- | 0.308 | 2.05 | 49.61 | 1867 | -- | -- |
| 114.09 | 0.499 | 10.1 | 0.825 | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
| 79.23 | 0.416 | 10.2 | -- | 0.943 | -- | -- | -- | 0.239 | 2.31 | -- | -- | -- | -- |
| 77.59 | 0.41 | 10.1 | -- | -- | -1.53 | -- | -- | 0.383 | -- | 1.625 | 1774 | -- | -- |
| 132.03 | 0.536 | 10.1 | -- | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.24 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 2 | 46.28 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 3 | 46.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 5 | 46.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 6 | 46.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 7 | 46.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 8 | 46.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 16 | 46.59 | radiation | 10 | 1440 | > th | dose independent | sin | 16 | NA |
| 19 | 46.64 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 31 | 46.64 | radiation | 10 | 1440 | < th | dose dependent | sin | 16 | NA |
| 81 | 47.12 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 95 | 47.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 96 | 47.16 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 97 | 47.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 98 | 47.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 99 | 47.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 16 |
| 180 | 47.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 214 | 47.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 216 | 47.75 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 335 | 48.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 407 | 48.43 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 14 |
| 426 | 48.48 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 443 | 48.52 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 444 | 48.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 445 | 48.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 449 | 48.53 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 450 | 48.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 456 | 48.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 494 | 48.62 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 495 | 48.62 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 591 | 48.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 598 | 48.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 646 | 48.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 673 | 48.78 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 3 |
| 739 | 48.90 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 753 | 48.90 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 779 | 48.93 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 780 | 48.93 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 784 | 48.94 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 12 |
| 785 | 48.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 789 | 48.94 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 791 | 48.95 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 843 | 48.99 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 19 |