BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0542600 Os05g0542600|AK101373
         (420 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80210.1  | chr1:30163357-30165628 REVERSE LENGTH=407          406   e-114
AT3G06820.2  | chr3:2151027-2153264 REVERSE LENGTH=406            390   e-109

>AT1G80210.1 | chr1:30163357-30165628 REVERSE LENGTH=407
          Length = 406

 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/387 (54%), Positives = 270/387 (69%), Gaps = 18/387 (4%)

Query: 1   MSLTEVRIGEEVWLTCLSHALTTETEEVMGLLFGDIKHSSRGG-VTALIWGASPQMRCER 59
           MSLT V + E+VWLTCL+HAL+TETEE+MGLL GDI++S  GG  TA+IWGASPQ R +R
Sbjct: 1   MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKDGGSATAMIWGASPQSRSDR 60

Query: 60  KKDRVEVNPXXXXXXXXXXXXXXXXIGEKTRVIGWYHSHPHITVLPSHVDVRTQAMFQLM 119
           +KDRVE NP                 G  TRVIGWYHSHPHITVLPSHVDVRTQAM+QL+
Sbjct: 61  QKDRVETNPEQLAAASAQADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL 120

Query: 120 EPGFVGLIFSCFSEDAQKVGKIQVIAFQSLGGNQQS-------VVPVNDPVINLESSWSS 172
           + GF+GLIFSCFSEDA KVG+IQVIAFQS  G   S       V+   D VI+LESS+SS
Sbjct: 121 DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDLESSFSS 180

Query: 173 ---LDDTSHPALIEGIEQDTGDSKSSRNSKVWAKSSDVDFYPHFDANHSAKHQSKENAIV 229
              +   S  A  +  E DT D+ ++  SK   + SD  F   F  N  A +  ++    
Sbjct: 181 SDSIYQRSSSARGDNPELDTSDTATTSGSKGGGRVSD--FEAFFVNNTEANNTRRDGT-- 236

Query: 230 AYDPNNAPETPVDLDESDMTPSIQEALHRSNMDISGAEYVRKEVPLYVFPTRHLLKLDTT 289
                N   T +++D  DM+ S+QEA+HRSN++ SG  YVRKEVPL+V PT  LL+L++ 
Sbjct: 237 ---SGNYSSTAIEIDSMDMSESMQEAMHRSNLETSGVGYVRKEVPLHVLPTSSLLQLNSP 293

Query: 290 LTSYCDMQHVVFEEEKSAYNQAMHQNIRDGKIHPLTSIHHASTYNSSLCKLMEYCLSPAI 349
           L S+  +Q V++EEE++AY+Q++ Q+ RDG++HPL  IH+ STY +S+CKL+EYCLSPAI
Sbjct: 294 LASFKSLQRVLYEEERAAYHQSVQQSKRDGRVHPLAFIHNTSTYQASMCKLIEYCLSPAI 353

Query: 350 TVLQDRLKENELRLSMLMEEAKQLEAE 376
             LQDRLKEN++RL+MLM+EA+ LEA+
Sbjct: 354 NALQDRLKENKIRLAMLMDEAEVLEAQ 380



>AT3G06820.2 | chr3:2151027-2153264 REVERSE LENGTH=406
          Length = 405

 Score =  390 bits (1003), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/384 (53%), Positives = 264/384 (68%), Gaps = 13/384 (3%)

Query: 1   MSLTEVRIGEEVWLTCLSHALTTETEEVMGLLFGDIKHSSRG-GVTALIWGASPQMRCER 59
           MSLT V + E+VWLTCL+HAL+TETEE+MGLL GDI++S  G   TA+IWGASPQ R +R
Sbjct: 1   MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLGDIEYSKNGESATAMIWGASPQPRSDR 60

Query: 60  KKDRVEVNPXXXXXXXXXXXXXXXXIGEKTRVIGWYHSHPHITVLPSHVDVRTQAMFQLM 119
           +KDRVE NP                 G  TRVIGWYHSHPHITVLPSHVDVRTQAM+QL+
Sbjct: 61  QKDRVETNPEQLAAASAQADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLL 120

Query: 120 EPGFVGLIFSCFSEDAQKVGKIQVIAFQSLGGNQQS-------VVPVNDPVINLESSWSS 172
           + GF+GLIFSCFSEDA KVG+IQVIAFQS  G   S       V+   D VI++ESS SS
Sbjct: 121 DSGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKPNSIPKSMSLVLANKDSVIDIESSSSS 180

Query: 173 LDDTSHPALIEGIEQDTGDSKSSRNSKVWAKSSDVDFYPHFDANHSAKHQSKENAIVAYD 232
            D     +     E DT D+ ++  SK   + SD  F P F  N  A    ++     + 
Sbjct: 181 SDSIYQRSSSSKPELDTIDTATTSGSKGGGRVSD--FGPFFTNNIEANITGRDET---HK 235

Query: 233 PNNAPETPVDLDESDMTPSIQEALHRSNMDISGAEYVRKEVPLYVFPTRHLLKLDTTLTS 292
             N   T + +D  DM+ S+QEA+ RSN+D SGA YVRKEVPL+V PT  LL +++ L S
Sbjct: 236 SGNLSSTTIGIDSMDMSESMQEAMLRSNLDTSGAGYVRKEVPLHVLPTSSLLPVNSPLAS 295

Query: 293 YCDMQHVVFEEEKSAYNQAMHQNIRDGKIHPLTSIHHASTYNSSLCKLMEYCLSPAITVL 352
           +  +Q V++EEE++AY Q++ QN+RDG++HPL  IH+ STY +S+CKL+EYCLSPAI  L
Sbjct: 296 FKSLQRVLYEEERAAYYQSVQQNMRDGRVHPLAFIHNTSTYQASMCKLIEYCLSPAINAL 355

Query: 353 QDRLKENELRLSMLMEEAKQLEAE 376
           QDR KEN++RL+MLM+EA+ LEA+
Sbjct: 356 QDRQKENKIRLAMLMDEAEVLEAQ 379



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,040,083
Number of extensions: 364729
Number of successful extensions: 1085
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1078
Number of HSP's successfully gapped: 2
Length of query: 420
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 319
Effective length of database: 8,337,553
Effective search space: 2659679407
Effective search space used: 2659679407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)