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Os05g0536400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0126) R2 : 0.485
β1 : -0.952 (0.046) R2dD : 0.502 R2D : 0.472
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0779 (0.0268) R2dN8 : 0.0128 R2N8 : -0.0169
σ : 0.236
deviance : 25.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.45 0.207 11.5 -0.587 0.26 4.85 -0.0819 11.3 -0.106 14.8 15.4 4730 -- --
20.02 0.21 11.3 -0.997 0.254 -0.694 -0.00722 -- -0.086 14.7 15.4 4730 -- --
19.47 0.205 11.5 -0.587 0.259 4.87 -- 11.3 -0.106 14.7 15.4 4729 -- --
19.45 0.205 11.3 -1.09 0.256 -0.658 -- -- -0.11 14.6 14.74 6192 -- --
23.37 0.225 11.5 -0.607 -- 4.75 -- 11 -0.112 -- 15.4 4732 -- --
21.69 0.218 11.3 -0.941 0.254 -- -0.00924 -- -0.0715 14.7 -- -- -- --
21.69 0.218 11.3 -0.941 0.254 -- -- -- -0.0715 14.7 -- -- -- --
23.28 0.225 11.3 -1.1 -- -0.648 -- -- -0.115 -- 14.77 6158 -- --
37.1 0.284 11.2 -- 0.108 0.593 -- -- 0.131 14.9 19.3 12859 -- --
25.45 0.236 11.3 -0.952 -- -- -- -- -0.0779 -- -- -- -- --
45.02 0.314 11.3 -- 0.272 -- -- -- 0.0333 14.7 -- -- -- --
31.59 0.262 11.2 -- -- 0.627 -- -- 0.233 -- 21.02 47520 -- --
49.33 0.328 11.3 -- -- -- -- -- 0.0276 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.70 humidity 80.0 4320 < th dose dependent rect. 21 1
2 18.89 radiation 30.0 4320 < th dose independent rect. 23 8
3 18.97 radiation 30.0 4320 < th dose independent rect. 17 14
7 19.08 temperature 20.0 1440 < th dose dependent rect. 8 1
8 19.11 humidity 90.0 720 < th dose independent rect. 9 9
9 19.13 humidity 90.0 720 < th dose independent sin 23 NA
12 19.17 temperature 20.0 1440 < th dose dependent rect. 7 6
15 19.19 radiation 20.0 4320 < th dose independent rect. 20 10
16 19.19 humidity 90.0 720 > th dose independent rect. 8 11
19 19.19 temperature 20.0 1440 < th dose dependent rect. 8 11
24 19.21 temperature 10.0 43200 > th dose independent rect. 14 6
25 19.21 temperature 10.0 43200 > th dose independent rect. 12 8
27 19.22 temperature 10.0 43200 > th dose independent rect. 16 4
39 19.28 humidity 90.0 720 < th dose independent rect. 9 6
45 19.29 precipitation 0.1 720 > th dose independent rect. 5 13
46 19.29 humidity 90.0 720 < th dose independent rect. 6 14
48 19.30 temperature 15.0 720 > th dose independent rect. 3 21
51 19.31 radiation 10.0 4320 > th dose independent rect. 5 1
64 19.31 radiation 10.0 4320 > th dose dependent rect. 5 1
88 19.37 temperature 15.0 720 > th dose independent rect. 3 18
89 19.37 humidity 80.0 270 > th dose independent rect. 21 18
91 19.38 temperature 15.0 4320 > th dose independent rect. 19 1
104 19.39 humidity 50.0 43200 < th dose dependent rect. 6 2
105 19.39 humidity 90.0 720 > th dose dependent rect. 8 11
114 19.41 temperature 20.0 720 < th dose dependent rect. 8 20
119 19.42 temperature 15.0 1440 > th dose independent rect. 16 15
123 19.42 humidity 80.0 1440 > th dose dependent rect. 9 3
138 19.43 humidity 80.0 1440 > th dose dependent rect. 10 1
145 19.44 humidity 90.0 1440 < th dose independent rect. 9 2
148 19.44 humidity 80.0 270 > th dose independent rect. 21 15
150 19.44 humidity 80.0 270 > th dose independent rect. 8 21
154 19.45 humidity 50.0 43200 > th dose independent rect. 6 1
155 19.45 temperature 20.0 1440 < th dose independent rect. 8 4
156 19.45 humidity 50.0 14400 > th dose independent rect. 23 10
159 19.45 temperature 15.0 1440 > th dose independent rect. 14 17
162 19.45 temperature 20.0 720 < th dose dependent sin 23 NA
177 19.46 humidity 50.0 43200 > th dose independent rect. 23 6
180 19.46 humidity 90.0 4320 > th dose dependent rect. 12 1
182 19.46 humidity 90.0 720 > th dose dependent rect. 9 9
186 19.46 temperature 15.0 4320 < th dose dependent rect. 23 20
188 19.47 humidity 90.0 4320 > th dose independent rect. 12 1
197 19.47 temperature 15.0 4320 < th dose dependent rect. 1 1
200 19.47 temperature 15.0 4320 < th dose dependent rect. 23 4
201 19.47 precipitation 0.1 720 > th dose dependent rect. 5 13
203 19.47 temperature 15.0 4320 < th dose dependent rect. 22 17
214 19.48 radiation 30.0 4320 < th dose independent rect. 6 1
229 19.48 temperature 15.0 4320 < th dose dependent rect. 22 15
234 19.48 temperature 20.0 720 < th dose dependent rect. 3 18
249 19.49 temperature 15.0 4320 < th dose dependent sin 9 NA
252 19.49 temperature 20.0 4320 < th dose dependent rect. 12 1
265 19.49 temperature 15.0 4320 < th dose dependent rect. 19 12
266 19.49 temperature 15.0 4320 < th dose dependent rect. 22 12
295 19.49 temperature 20.0 720 < th dose dependent rect. 1 21
306 19.50 humidity 50.0 43200 < th dose independent rect. 6 1
313 19.50 temperature 20.0 1440 < th dose independent rect. 8 6
315 19.50 humidity 50.0 43200 > th dose independent rect. 23 8
323 19.50 temperature 15.0 720 > th dose independent rect. 19 20
400 19.51 humidity 50.0 43200 < th dose independent rect. 15 17
406 19.51 temperature 15.0 4320 < th dose dependent no NA NA
412 19.51 temperature 20.0 4320 < th dose dependent rect. 11 6
486 19.52 temperature 20.0 1440 > th dose independent rect. 8 4
493 19.52 precipitation 0.1 720 > th dose independent rect. 20 22
494 19.52 temperature 15.0 4320 < th dose dependent sin 1 NA
518 19.53 humidity 90.0 1440 > th dose independent rect. 9 2
524 19.53 temperature 15.0 1440 > th dose independent rect. 23 8
570 19.54 temperature 15.0 1440 > th dose independent rect. 16 12
590 19.54 humidity 70.0 43200 < th dose dependent rect. 5 6
609 19.55 temperature 15.0 1440 > th dose independent sin 12 NA
612 19.55 temperature 15.0 4320 < th dose independent rect. 4 1
617 19.55 temperature 15.0 4320 > th dose independent rect. 3 3
624 19.55 temperature 20.0 1440 > th dose independent rect. 8 11
628 19.55 humidity 50.0 43200 > th dose independent rect. 14 17
634 19.55 temperature 20.0 720 < th dose dependent no NA NA
635 19.55 precipitation 0.1 720 > th dose dependent sin 1 NA
639 19.55 humidity 80.0 4320 < th dose dependent rect. 20 5
648 19.55 temperature 15.0 4320 < th dose dependent rect. 4 15
658 19.56 temperature 15.0 720 > th dose independent sin 23 NA
659 19.56 temperature 15.0 14400 > th dose independent rect. 7 1
660 19.56 humidity 70.0 43200 > th dose independent rect. 3 1
663 19.56 humidity 50.0 43200 < th dose independent rect. 15 2
664 19.56 precipitation 0.1 1440 < th dose independent rect. 9 3
668 19.56 temperature 15.0 4320 < th dose independent rect. 2 5
672 19.56 temperature 20.0 1440 > th dose independent rect. 8 6
679 19.56 temperature 20.0 1440 < th dose independent rect. 8 11
690 19.56 temperature 15.0 270 > th dose independent rect. 8 23
694 19.56 precipitation 0.1 1440 < th dose dependent rect. 9 3
715 19.57 wind 9.0 14400 < th dose independent rect. 19 1
725 19.57 temperature 20.0 720 > th dose independent rect. 10 5
729 19.57 temperature 20.0 1440 > th dose independent rect. 8 9
742 19.57 temperature 15.0 1440 > th dose independent rect. 23 21
774 19.58 humidity 50.0 43200 < th dose independent sin 12 NA
775 19.58 radiation 1.0 1440 > th dose independent rect. 10 1
778 19.58 humidity 50.0 43200 > th dose independent rect. 14 4
781 19.58 temperature 15.0 4320 > th dose independent rect. 14 6
824 19.58 temperature 20.0 720 < th dose dependent rect. 13 23
827 19.59 temperature 15.0 270 > th dose independent sin 7 NA
831 19.59 temperature 15.0 90 > th dose independent sin 19 NA
849 19.59 humidity 50.0 43200 < th dose independent rect. 15 6
854 19.59 humidity 60.0 43200 > th dose independent rect. 4 8
911 19.60 humidity 50.0 43200 < th dose independent rect. 15 4
962 19.60 temperature 15.0 4320 < th dose dependent rect. 5 10
974 19.60 precipitation 0.1 720 > th dose dependent rect. 1 17
977 19.60 humidity 50.0 43200 < th dose dependent rect. 15 18
986 19.61 humidity 50.0 43200 > th dose independent sin 12 NA
987 19.61 precipitation 0.1 720 > th dose independent sin 0 NA
988 19.61 humidity 50.0 43200 > th dose independent rect. 3 1
995 19.61 humidity 50.0 43200 > th dose independent rect. 15 2
999 19.61 radiation 1.0 1440 < th dose independent rect. 10 2