Os05g0535700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0535700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.34 | 0.298 | 10.4 | -1.23 | 0.206 | -0.449 | -0.115 | 0.131 | -0.128 | 16.9 | 1008 | 9417 | -- | -- |
| 40.38 | 0.296 | 10.4 | -1.19 | 0.208 | -0.456 | -0.108 | -- | -0.121 | 16.9 | 1009 | 9364 | -- | -- |
| 40.37 | 0.296 | 10.4 | -1.23 | 0.205 | -0.45 | -- | 0.125 | -0.13 | 16.8 | 1009 | 9420 | -- | -- |
| 40.41 | 0.296 | 10.4 | -1.2 | 0.206 | -0.454 | -- | -- | -0.122 | 16.8 | 1009 | 9359 | -- | -- |
| 42.58 | 0.304 | 10.4 | -1.24 | -- | -0.438 | -- | 0.128 | -0.139 | -- | 1009 | 9238 | -- | -- |
| 47.98 | 0.325 | 10.4 | -1 | 0.194 | -- | -0.171 | -- | -0.00854 | 17 | -- | -- | -- | -- |
| 48.05 | 0.325 | 10.4 | -1 | 0.193 | -- | -- | -- | -0.00933 | 16.9 | -- | -- | -- | -- |
| 42.61 | 0.304 | 10.4 | -1.22 | -- | -0.447 | -- | -- | -0.137 | -- | 1010 | 8749 | -- | -- |
| 73.29 | 0.399 | 10.4 | -- | 0.221 | -0.195 | -- | -- | 0.0679 | 16.6 | 1007 | 10739 | -- | -- |
| 50.01 | 0.33 | 10.4 | -1.01 | -- | -- | -- | -- | -0.0143 | -- | -- | -- | -- | -- |
| 74.62 | 0.404 | 10.4 | -- | 0.211 | -- | -- | -- | 0.102 | 16.7 | -- | -- | -- | -- |
| 75.35 | 0.404 | 10.4 | -- | -- | -0.24 | -- | -- | 0.0944 | -- | 1002 | 10673 | -- | -- |
| 76.98 | 0.41 | 10.4 | -- | -- | -- | -- | -- | 0.0979 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 2 | 40.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 18 |
| 10 | 40.32 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 12 | 40.35 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 16 | 40.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 24 | 40.46 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 29 | 40.49 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 4 | 14 |
| 34 | 40.53 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 9 | 8 |
| 40 | 40.53 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 46 | 40.55 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 67 | 40.58 | atmosphere | 1010 | 4320 | > th | dose independent | sin | 0 | NA |
| 70 | 40.58 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 95 | 40.60 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 104 | 40.61 | atmosphere | 1010 | 4320 | < th | dose independent | sin | 1 | NA |
| 106 | 40.61 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 125 | 40.62 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 4 | 7 |
| 165 | 40.65 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 244 | 40.69 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 259 | 40.70 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 262 | 40.70 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 367 | 40.74 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 412 | 40.75 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 8 | 23 |
| 415 | 40.76 | atmosphere | 1010 | 4320 | > th | dose independent | no | NA | NA |
| 432 | 40.76 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 473 | 40.78 | atmosphere | 1010 | 4320 | < th | dose independent | no | NA | NA |
| 500 | 40.78 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 522 | 40.79 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 12 | 23 |
| 647 | 40.84 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 945 | 41.00 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |