BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0535700 Os05g0535700|AK062545
         (80 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53650.1  | chr5:21791265-21792242 FORWARD LENGTH=73            54   1e-08

>AT5G53650.1 | chr5:21791265-21792242 FORWARD LENGTH=73
          Length = 72

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 8/80 (10%)

Query: 1  MGFMLRVRLASXXXXXXXXXXXXXXXLYKDYKLAHDSMALQVKGLQDHVDARYKALDKRL 60
          MG++ RVRLAS               LYKDYK+AH+S++ Q K   D       +LD+R+
Sbjct: 1  MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHD-------SLDRRI 53

Query: 61 ATLEDQKTSETAPDVGVPSD 80
          +TLE  + SE AP +   ++
Sbjct: 54 STLESLRQSE-APQLAETTE 72



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,176,937
Number of extensions: 28816
Number of successful extensions: 87
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 80
Length of database: 11,106,569
Length adjustment: 52
Effective length of query: 28
Effective length of database: 9,680,937
Effective search space: 271066236
Effective search space used: 271066236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)