Os05g0535500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Interphase cyctoplasmic foci protein 45.
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Os05g0535500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Interphase cyctoplasmic foci protein 45.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.16 | 0.221 | 9.89 | -0.8 | 0.52 | 0.291 | -0.127 | -0.715 | 0.0941 | 18.2 | 18.91 | 2610 | -- | -- |
| 22.67 | 0.222 | 9.86 | -0.761 | 0.503 | 0.58 | -0.149 | -- | 0.124 | 18.2 | 18.1 | 3211 | -- | -- |
| 22.18 | 0.219 | 9.89 | -0.791 | 0.513 | 0.281 | -- | -0.7 | 0.0972 | 18.2 | 18.96 | 2426 | -- | -- |
| 22.61 | 0.221 | 9.86 | -0.73 | 0.518 | 0.558 | -- | -- | 0.117 | 18.3 | 18 | 3212 | -- | -- |
| 35.39 | 0.277 | 9.88 | -0.801 | -- | 0.305 | -- | -0.734 | 0.0859 | -- | 18.94 | 2092 | -- | -- |
| 26.19 | 0.24 | 9.85 | -0.498 | 0.51 | -- | -0.0521 | -- | 0.202 | 18.3 | -- | -- | -- | -- |
| 26.2 | 0.24 | 9.85 | -0.497 | 0.51 | -- | -- | -- | 0.202 | 18.3 | -- | -- | -- | -- |
| 36.15 | 0.28 | 9.86 | -0.781 | -- | 0.612 | -- | -- | 0.106 | -- | 17.1 | 6363 | -- | -- |
| 26.93 | 0.242 | 9.81 | -- | 0.517 | -0.339 | -- | -- | 0.409 | 18.7 | 21.8 | 47520 | -- | -- |
| 39.69 | 0.294 | 9.84 | -0.511 | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
| 32.71 | 0.268 | 9.83 | -- | 0.517 | -- | -- | -- | 0.257 | 18.3 | -- | -- | -- | -- |
| 39.39 | 0.292 | 9.79 | -- | -- | -0.39 | -- | -- | 0.401 | -- | 26.18 | 47520 | -- | -- |
| 46.57 | 0.319 | 9.83 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 4 | 20.48 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 14 | 20.53 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 30 | 20.61 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 49 | 20.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 50 | 20.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 55 | 20.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 19 |
| 68 | 20.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 95 | 20.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 149 | 20.83 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 151 | 20.84 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 173 | 20.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 174 | 20.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 190 | 20.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 204 | 20.95 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 19 |
| 210 | 20.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 211 | 20.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 214 | 20.98 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 232 | 21.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 12 |
| 235 | 21.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 241 | 21.03 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 19 |
| 247 | 21.05 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 249 | 21.05 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 255 | 21.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 258 | 21.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 261 | 21.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 264 | 21.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 275 | 21.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 291 | 21.18 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 295 | 21.19 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 296 | 21.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 297 | 21.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 302 | 21.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 304 | 21.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 309 | 21.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 324 | 21.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 334 | 21.25 | humidity | 90.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 341 | 21.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 454 | 21.40 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 455 | 21.40 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 460 | 21.41 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 472 | 21.43 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 505 | 21.46 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 529 | 21.50 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 540 | 21.51 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 566 | 21.54 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 584 | 21.55 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 598 | 21.57 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 608 | 21.57 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 625 | 21.58 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 626 | 21.58 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 628 | 21.58 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 632 | 21.59 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 649 | 21.60 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 653 | 21.60 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 658 | 21.61 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 666 | 21.62 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 679 | 21.63 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 705 | 21.64 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 718 | 21.65 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 739 | 21.67 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 747 | 21.67 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 817 | 21.71 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 844 | 21.72 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 20 | 7 |
| 946 | 21.77 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 971 | 21.79 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |