BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0535500 Os05g0535500|AK063545
(525 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32320.2 | chr2:13727938-13731428 FORWARD LENGTH=538 530 e-151
AT2G31580.1 | chr2:13441137-13445837 REVERSE LENGTH=568 526 e-149
>AT2G32320.2 | chr2:13727938-13731428 FORWARD LENGTH=538
Length = 537
Score = 530 bits (1365), Expect = e-151, Method: Compositional matrix adjust.
Identities = 267/535 (49%), Positives = 360/535 (67%), Gaps = 24/535 (4%)
Query: 7 MANSEYEYVKREFELDSLLPPSNWIVVRIDGCHFHRFSKIHTFEKPNDERALRLMNACAT 66
MANS+YEYVK FE++ + N I++RIDG F RFS++H FEKPNDE +L LMN+CA+
Sbjct: 1 MANSKYEYVK-SFEVEDEVMFPNLIIIRIDGRDFSRFSQVHKFEKPNDETSLNLMNSCAS 59
Query: 67 SMLEKFPDIVFAYGVSDEYSFVFREETEFYQRRESKILSLCVSYFTSVYVMKWKDFFPNK 126
S+L ++PDIVFAYG SDEYSFVF++ + FYQRR SKILSL S+F +VYV KWK+FFP+
Sbjct: 60 SVLVEYPDIVFAYGYSDEYSFVFKKASRFYQRRASKILSLVASFFAAVYVTKWKEFFPHT 119
Query: 127 ELKEPPYFDGRVVCYPNLKTIRDYLAWRQVDCHINNQYNTCFWSLVKSGKTEKEAQQALK 186
+L+ P F +VV +++ ++ YLAWRQ DCHI+NQY+TC W LVKSGKT E Q+ LK
Sbjct: 120 KLEYAPSFASKVVSCASVEVLQAYLAWRQHDCHISNQYDTCLWMLVKSGKTLSETQEILK 179
Query: 187 GTFSKDKNELLSQQFQINYDDEPAIFRKGSCVYRDKV------------ETMVKTDRCGN 234
T + +NELL QQF INY P +FR+GSC+++ KV E VK D G
Sbjct: 180 DTQKQQRNELLFQQFGINYKMLPVLFRQGSCLFKTKVIFSIISFFYFLLEETVKHDENGK 239
Query: 235 PIKRTRLVITNANVD-IIGPEFWENHPYILRE--------EKCRYENVKKFDINHRLPPC 285
P+KR R T + + + G FW H + ++ K + VK F RL P
Sbjct: 240 PVKRLRRRETLVHSENVAGRSFWNEHSSLHKDLGHFAKDIGKIEPDYVKSFQFESRLLPL 299
Query: 286 NWTVVRIDICKFEQFSLIHSFDKPNDEAALRLMNASASLMMESFPDIVFGYGFSNEYSFV 345
W VVRID C F +FS +H F+KPNDE AL+LMN+ A ++E F DI F YG S+E+SFV
Sbjct: 300 TWVVVRIDGCHFHRFSEVHEFEKPNDEQALKLMNSCAVAVLEEFQDIAFAYGVSDEFSFV 359
Query: 346 FQDKTELYQRQESLILSSCTSRFTLFYMMKWKDFFPNKDLVEPPHFEAELLCYPKQKILC 405
++K+ELY+RQ S I+S+ S FT YMM+W DFFP+K L PP F+ +CYP IL
Sbjct: 360 LKNKSELYKRQSSKIISAVVSFFTSTYMMRWGDFFPHKKLKYPPSFDGRAVCYPTSDILL 419
Query: 406 DYLSSRQAECHTTNQYSTCFWMLVKSGKSENEAREILKGTLSKDKNELLFQQFHLNYNNE 465
DYL+ RQ +CH NQY+TCFWMLVKSGKS+ +A++ LKGT +++KNELL QQF + YN+
Sbjct: 420 DYLAWRQVDCHINNQYNTCFWMLVKSGKSKIQAQDYLKGTQTREKNELLSQQFGIEYNSL 479
Query: 466 PAVFRKGSCTYRQKVEESADAEGRENTTRE-RWDVIVAHADMGTE-FWRKHPYIL 518
P +FR GS +R K +E E E + ++ +V V ++++ + FW++HP+IL
Sbjct: 480 PVIFRMGSSVFRLKTQEGVTEENGEVSGKQVEAEVGVDYSNIIDQCFWQQHPHIL 534
>AT2G31580.1 | chr2:13441137-13445837 REVERSE LENGTH=568
Length = 567
Score = 526 bits (1355), Expect = e-149, Method: Compositional matrix adjust.
Identities = 261/527 (49%), Positives = 356/527 (67%), Gaps = 15/527 (2%)
Query: 2 EGVTAMANSEYEYVKREFELDSLLPPSNWIVVRIDGCHFHRFSKIHTFEKPNDERALRLM 61
E + MANS+YEYVK FEL+ + N +VVRIDG F RFS++H FEKPNDE AL LM
Sbjct: 43 ETLRDMANSKYEYVK-SFELEDEVMLPNLMVVRIDGRDFSRFSQVHEFEKPNDETALNLM 101
Query: 62 NACATSMLEKFPDIVFAYGVSDEYSFVFREETEFYQRRESKILSLCVSYFTSVYVMKWKD 121
N+C+ ++LE+FPDI+FAYG SDEYSFVF++ + FYQRR SKILSL S+F +VYV KWK+
Sbjct: 102 NSCSAAVLEEFPDIIFAYGYSDEYSFVFKKTSRFYQRRASKILSLVASFFAAVYVTKWKE 161
Query: 122 FFPNKELKEPPYFDGRVVCYPNLKTIRDYLAWRQVDCHINNQYNTCFWSLVKSGKTEKEA 181
FFP ++L P F +VV + + ++ YLAWRQ DCH NNQY+TCFW LVKSGK+ E
Sbjct: 162 FFPQRKLLYAPSFSSKVVSCASAEVLQAYLAWRQQDCHANNQYDTCFWMLVKSGKSVSET 221
Query: 182 QQALKGTFSKDKNELLSQQFQINYDDEPAIFRKGSCVYRDKVETMVKTDRCGNPIKRTRL 241
Q+ LK T + KNELL Q+F INY P +FR+GSC+++ KVE VK D GNP+KR R
Sbjct: 222 QEILKDTQKQQKNELLFQKFGINYKTLPELFRQGSCLFKKKVEETVKHDENGNPVKRLRR 281
Query: 242 -VITNANVDIIGPEFWENHPYILRE--------EKCRYENVKKFDINHRLPPCNWTVVRI 292
+ + +I G FW P + + K + ++ F ++L P W VVRI
Sbjct: 282 KAVFVHSENIAGRSFWNEQPSLYNDLGHFTKDIGKIEPDFIRSFQFENKLLPLTWVVVRI 341
Query: 293 DICKFEQFSLIHSFDKPNDEAALRLMNASASLMMESFPDIVFGYGFSNEYSFVFQDKTEL 352
D C F +FS +H F+KPNDE AL+LMN+ A ++E F DI F YG S+EYSFV + ++EL
Sbjct: 342 DGCHFHRFSDVHEFEKPNDEQALKLMNSCAVAVLEEFEDIHFAYGVSDEYSFVLKKESEL 401
Query: 353 YQRQESLILSSCTSRFTLFYMMKWKDFFPNKDLVEPPHFEAELLCYPKQKILCDYLSSRQ 412
Y+RQ S I+S+ S FT Y+++W +FFP+K+L PP F+ +CYP IL DYL+ RQ
Sbjct: 402 YKRQSSKIISAVASFFTSTYVLQWGEFFPHKELKYPPSFDGRAVCYPTYNILLDYLAWRQ 461
Query: 413 AECHTTNQYSTCFWMLVKSGKSENEAREILKGTLSKDKNELLFQQFHLNYNNEPAVFRKG 472
+CH NQY+TCFWMLVKSGK++ ++++ LKGT +++KNELL +QF + YN+ P +FR G
Sbjct: 462 VDCHINNQYNTCFWMLVKSGKNKTQSQDYLKGTQTREKNELLSRQFGIEYNSLPVIFRMG 521
Query: 473 SCTYRQKVEESADAEGRENTTRERWDVIVAHADMGTE-FWRKHPYIL 518
S +R K E+ G+ + +V+V H ++ FW +H +IL
Sbjct: 522 SSVFRLKEAENGVVSGK----KLEGEVVVDHCNIIERCFWEEHLHIL 564
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,377,689
Number of extensions: 538256
Number of successful extensions: 1171
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1162
Number of HSP's successfully gapped: 4
Length of query: 525
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 422
Effective length of database: 8,282,721
Effective search space: 3495308262
Effective search space used: 3495308262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)