Os05g0535300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0535300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.33 | 0.368 | 7.26 | 0.23 | 0.648 | -0.873 | 0.6 | -1.2 | 0.452 | 22.6 | 27.07 | 10 | -- | -- |
| 63.26 | 0.37 | 7.27 | 0.0194 | 0.648 | -1.01 | 0.266 | -- | 0.446 | 22.8 | 82.66 | 10 | -- | -- |
| 62.47 | 0.371 | 7.26 | 0.144 | 0.645 | -0.848 | -- | -0.805 | 0.438 | 22.6 | 27.3 | 11 | -- | -- |
| 63.55 | 0.371 | 7.27 | 0.00973 | 0.644 | -1.01 | -- | -- | 0.443 | 22.9 | 91.57 | 10 | -- | -- |
| 73.08 | 0.398 | 7.26 | 0.00952 | -- | -1.03 | -- | -0.522 | 0.371 | -- | 29.46 | 737 | -- | -- |
| 72.68 | 0.4 | 7.24 | 0.22 | 0.523 | -- | 0.377 | -- | 0.586 | 21.1 | -- | -- | -- | -- |
| 73.17 | 0.401 | 7.24 | 0.206 | 0.52 | -- | -- | -- | 0.586 | 21.2 | -- | -- | -- | -- |
| 73.16 | 0.398 | 7.26 | -0.051 | -- | -0.981 | -- | -- | 0.414 | -- | 31.33 | 731 | -- | -- |
| 63.55 | 0.371 | 7.27 | -- | 0.645 | -1.01 | -- | -- | 0.442 | 22.9 | 118.4 | 10 | -- | -- |
| 88.84 | 0.44 | 7.22 | 0.208 | -- | -- | -- | -- | 0.583 | -- | -- | -- | -- | -- |
| 74.29 | 0.403 | 7.24 | -- | 0.52 | -- | -- | -- | 0.563 | 21.2 | -- | -- | -- | -- |
| 73.22 | 0.399 | 7.26 | -- | -- | -0.97 | -- | -- | 0.42 | -- | 31.54 | 727 | -- | -- |
| 89.97 | 0.443 | 7.23 | -- | -- | -- | -- | -- | 0.56 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 2 | 58.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 3 | 58.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 8 | 59.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 15 | 59.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 17 | 59.50 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 23 | 59.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 35 | 59.91 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 51 | 60.08 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 57 | 60.13 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 63 | 60.19 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 73 | 60.28 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 78 | 60.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 134 | 60.69 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 148 | 60.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 186 | 61.01 | wind | 9 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 193 | 61.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 207 | 61.18 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 20 |
| 246 | 61.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 250 | 61.41 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 272 | 61.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 290 | 61.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 291 | 61.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 302 | 61.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 354 | 61.76 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 379 | 61.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 391 | 61.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 397 | 61.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 438 | 62.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 15 |
| 462 | 62.10 | wind | 9 | 14400 | < th | dose independent | sin | 4 | NA |
| 496 | 62.18 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 511 | 62.22 | wind | 9 | 14400 | > th | dose independent | sin | 4 | NA |
| 531 | 62.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 533 | 62.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 534 | 62.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 544 | 62.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 550 | 62.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 580 | 62.38 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 600 | 62.44 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 608 | 62.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 619 | 62.48 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 688 | 62.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 694 | 62.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 748 | 62.73 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 755 | 62.74 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 18 |
| 760 | 62.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 771 | 62.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 775 | 62.77 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 14 |
| 787 | 62.78 | wind | 9 | 14400 | > th | dose dependent | sin | 4 | NA |
| 804 | 62.81 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 22 |
| 866 | 62.91 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 900 | 62.99 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 904 | 62.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 921 | 63.02 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 997 | 63.10 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 18 |