Os05g0534100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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Os05g0534100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 195.28 | 0.657 | 10.7 | -2.19 | 0.66 | -2.04 | -1.85 | -0.344 | -0.57 | 12 | 21.16 | 3870 | -- | -- |
| 195.43 | 0.651 | 10.6 | -2.13 | 0.659 | -1.99 | -1.83 | -- | -0.554 | 12 | 21.19 | 3847 | -- | -- |
| 209.93 | 0.675 | 10.6 | -2.21 | 0.672 | -2.01 | -- | -0.0701 | -0.567 | 12.1 | 21.2 | 3835 | -- | -- |
| 209.83 | 0.675 | 10.6 | -2.21 | 0.667 | -1.99 | -- | -- | -0.565 | 12.3 | 21.19 | 3718 | -- | -- |
| 237.68 | 0.718 | 10.7 | -2.2 | -- | -2.05 | -- | -1.54e-06 | -0.56 | -- | 21.15 | 3726 | -- | -- |
| 287.22 | 0.795 | 10.8 | -3.31 | 0.773 | -- | -1.82 | -- | -1.18 | 12.2 | -- | -- | -- | -- |
| 301.55 | 0.813 | 10.8 | -3.38 | 0.78 | -- | -- | -- | -1.19 | 12.3 | -- | -- | -- | -- |
| 237.64 | 0.718 | 10.7 | -2.17 | -- | -2.09 | -- | -- | -0.546 | -- | 21.2 | 3735 | -- | -- |
| 223.44 | 0.696 | 10.5 | -- | 0.722 | -2.99 | -- | -- | -0.00932 | 12.2 | 19.38 | 47520 | -- | -- |
| 339.82 | 0.861 | 10.8 | -3.41 | -- | -- | -- | -- | -1.2 | -- | -- | -- | -- | -- |
| 603.1 | 1.15 | 10.7 | -- | 0.829 | -- | -- | -- | -0.816 | 12.5 | -- | -- | -- | -- |
| 255.4 | 0.744 | 10.5 | -- | -- | -3.07 | -- | -- | -0.032 | -- | 18.97 | 47520 | -- | -- |
| 646.25 | 1.19 | 10.7 | -- | -- | -- | -- | -- | -0.827 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.90 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 3 | 190.66 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 6 | 191.44 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 7 | 191.74 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 9 | 191.76 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 14 | 192.34 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 16 | 192.47 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 39 | 194.21 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 48 | 194.78 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 54 | 194.92 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 58 | 195.02 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 64 | 195.17 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 66 | 195.18 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 97 | 195.97 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 109 | 196.19 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 113 | 196.29 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 118 | 196.37 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 119 | 196.38 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 121 | 196.39 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 122 | 196.40 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 124 | 196.40 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 135 | 196.46 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 158 | 196.78 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 173 | 196.92 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 184 | 197.16 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 227 | 197.68 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 255 | 197.94 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 299 | 198.20 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 310 | 198.33 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 311 | 198.35 | temperature | 20.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 313 | 198.38 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 324 | 198.50 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 337 | 198.58 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 354 | 198.67 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 369 | 198.78 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 412 | 199.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 413 | 199.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 454 | 199.25 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 456 | 199.27 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 480 | 199.47 | temperature | 20.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 481 | 199.47 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 486 | 199.53 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 506 | 199.65 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 514 | 199.73 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 541 | 199.92 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 542 | 199.92 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 549 | 199.97 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 561 | 200.05 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 568 | 200.08 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 626 | 200.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 629 | 200.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 643 | 200.49 | atmosphere | 1015.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 695 | 200.73 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 697 | 200.74 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 713 | 200.82 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 726 | 200.89 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 727 | 200.90 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 734 | 200.94 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 791 | 201.19 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 800 | 201.24 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 825 | 201.34 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 2 | 15 |
| 831 | 201.36 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 873 | 201.51 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 894 | 201.59 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 19 | NA |
| 914 | 201.64 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 923 | 201.66 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 19 |