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Os05g0533600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Starch synthase IVa (Glycogen (Starch) synthase-like).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0168) R2 : 0.753
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.5 (0.0404) R2dC : 0.75 R2C : 0.745
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.121 (0.0354) R2dN8 : 0.00822 R2N8 : 0.00252
σ : 0.317
deviance : 46.05
__
_____
C
peak time of C : 22.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.7 0.273 10.8 -0.555 1.45 -0.283 -0.297 1.32 -0.216 23.3 78.79 406 -- --
38.02 0.287 10.8 -0.473 1.44 -0.263 -0.355 -- -0.205 23.2 79.17 473 -- --
33.89 0.271 10.8 -0.549 1.42 -0.32 -- 1.36 -0.218 23.3 80.6 463 -- --
38.25 0.288 10.8 -0.451 1.45 -0.29 -- -- -0.214 23.2 83 433 -- --
111.69 0.492 10.8 -0.667 -- -1.54 -- 2.38 -0.344 -- 68.37 868 -- --
39.06 0.293 10.8 -0.503 1.5 -- -0.43 -- -0.176 22.8 -- -- -- --
39.82 0.296 10.8 -0.486 1.5 -- -- -- -0.175 22.9 -- -- -- --
115.27 0.5 10.8 -0.439 -- -1.58 -- -- -0.312 -- 71 873 -- --
43.48 0.307 10.8 -- 1.44 -0.356 -- -- -0.179 23.3 83.38 420 -- --
179.71 0.626 10.8 -0.455 -- -- -- -- -0.166 -- -- -- -- --
46.05 0.317 10.8 -- 1.5 -- -- -- -0.121 22.8 -- -- -- --
120.2 0.511 10.8 -- -- -1.59 -- -- -0.268 -- 72.2 873 -- --
185.16 0.635 10.8 -- -- -- -- -- -0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.16 humidity 60.0 14400 > th dose independent rect. 24 7
2 33.22 humidity 80.0 270 > th dose independent sin 5 NA
4 33.35 humidity 70.0 270 > th dose dependent sin 6 NA
9 33.55 humidity 80.0 270 > th dose independent rect. 3 10
10 33.59 humidity 70.0 270 > th dose dependent rect. 19 15
13 33.60 humidity 80.0 270 > th dose dependent rect. 20 18
14 33.61 humidity 80.0 270 > th dose independent rect. 4 7
54 33.75 wind 5.0 270 < th dose independent rect. 21 7
55 33.75 temperature 15.0 270 > th dose independent rect. 20 8
70 33.80 radiation 1.0 270 < th dose dependent sin 11 NA
80 33.83 humidity 80.0 270 < th dose independent rect. 1 14
83 33.83 temperature 30.0 270 < th dose independent rect. 10 17
85 33.83 wind 9.0 270 < th dose dependent rect. 20 8
94 33.85 wind 9.0 270 < th dose independent rect. 4 16
99 33.86 humidity 50.0 270 > th dose dependent rect. 3 8
100 33.86 humidity 70.0 270 > th dose dependent rect. 3 8
106 33.87 temperature 30.0 270 < th dose independent rect. 20 8
107 33.87 humidity 50.0 270 > th dose independent rect. 20 8
110 33.87 atmosphere 995.0 270 > th dose independent rect. 20 8
111 33.87 radiation 1.0 270 < th dose independent rect. 20 8
116 33.87 temperature 10.0 270 > th dose independent rect. 4 16
117 33.87 atmosphere 1015.0 270 < th dose independent rect. 4 16
118 33.87 temperature 15.0 1440 > th dose independent rect. 7 17
119 33.87 radiation 1.0 270 < th dose dependent rect. 20 8
132 33.89 precipitation 0.1 270 < th dose independent rect. 20 8
133 33.89 precipitation 0.1 270 < th dose dependent rect. 20 8
147 33.91 radiation 1.0 270 < th dose independent sin 12 NA
149 33.91 temperature 30.0 270 < th dose independent rect. 9 8
153 33.91 humidity 70.0 270 > th dose dependent rect. 3 10
224 33.99 humidity 80.0 270 < th dose independent rect. 7 8
232 34.00 precipitation 0.1 10 < th dose independent rect. 6 17
235 34.00 precipitation 0.1 10 < th dose dependent rect. 6 17
267 34.06 precipitation 0.1 270 < th dose independent rect. 4 16
268 34.06 wind 9.0 10 < th dose dependent rect. 23 7
269 34.06 precipitation 0.1 270 < th dose dependent rect. 4 16
273 34.07 wind 3.0 720 < th dose dependent rect. 23 2
301 34.12 temperature 15.0 270 > th dose independent rect. 8 9
305 34.12 atmosphere 1015.0 270 < th dose dependent rect. 5 2
306 34.12 radiation 20.0 30 < th dose dependent rect. 23 8
313 34.13 temperature 15.0 10 > th dose independent rect. 23 7
315 34.13 wind 1.0 10 > th dose independent rect. 6 17
319 34.13 humidity 70.0 720 > th dose dependent rect. 19 8
335 34.15 wind 7.0 10 < th dose independent rect. 23 7
342 34.16 radiation 1.0 90 < th dose independent rect. 23 7
344 34.16 precipitation 0.1 90 < th dose independent rect. 6 15
349 34.16 precipitation 0.1 90 < th dose dependent rect. 6 15
351 34.16 humidity 70.0 270 > th dose dependent rect. 11 22
356 34.17 atmosphere 995.0 270 > th dose independent rect. 4 16
375 34.18 atmosphere 1015.0 270 < th dose dependent rect. 4 4
399 34.20 temperature 30.0 10 < th dose independent rect. 23 7
400 34.20 humidity 50.0 10 > th dose independent rect. 23 7
403 34.20 atmosphere 995.0 10 > th dose independent rect. 23 7
404 34.20 radiation 20.0 10 < th dose independent rect. 23 7
410 34.20 temperature 10.0 10 > th dose independent rect. 6 17
412 34.20 atmosphere 1015.0 10 < th dose independent rect. 6 17
499 34.24 wind 9.0 30 < th dose independent rect. 6 17
518 34.24 radiation 1.0 270 < th dose dependent rect. 20 22
534 34.26 humidity 70.0 1440 > th dose independent rect. 24 7
605 34.30 precipitation 0.1 90 < th dose independent rect. 23 7
606 34.30 humidity 50.0 270 > th dose independent rect. 8 9
620 34.30 precipitation 0.1 90 < th dose dependent rect. 23 7
633 34.30 humidity 70.0 30 > th dose dependent rect. 3 23
636 34.31 temperature 10.0 1440 > th dose independent rect. 24 7
639 34.31 temperature 30.0 1440 < th dose independent rect. 24 7
643 34.31 humidity 50.0 1440 > th dose independent rect. 24 7
648 34.31 atmosphere 995.0 1440 > th dose independent rect. 24 7
649 34.31 radiation 40.0 1440 < th dose independent rect. 24 7
698 34.33 humidity 80.0 270 > th dose dependent no NA NA
700 34.33 atmosphere 1015.0 270 < th dose dependent rect. 3 6
712 34.34 radiation 20.0 14400 < th dose independent rect. 24 6
722 34.34 humidity 80.0 10 > th dose dependent rect. 22 23
737 34.35 radiation 1.0 270 < th dose independent rect. 20 22
744 34.35 radiation 1.0 270 < th dose dependent rect. 16 12
749 34.35 humidity 80.0 270 > th dose dependent rect. 3 23
794 34.38 humidity 70.0 270 > th dose independent rect. 14 14
797 34.38 humidity 50.0 10 > th dose dependent rect. 23 7
818 34.39 radiation 1.0 90 < th dose dependent rect. 23 18
834 34.41 radiation 1.0 270 > th dose independent rect. 8 8
840 34.41 humidity 90.0 270 < th dose independent rect. 9 21
874 34.43 temperature 25.0 30 < th dose independent sin 10 NA
893 34.44 wind 1.0 270 > th dose independent rect. 13 10
920 34.45 humidity 70.0 10 > th dose dependent sin 10 NA
936 34.45 humidity 70.0 10 > th dose dependent rect. 14 22
937 34.46 radiation 1.0 90 < th dose independent sin 9 NA
942 34.46 radiation 20.0 10 < th dose dependent sin 9 NA
963 34.47 humidity 80.0 270 < th dose independent sin 3 NA