Os05g0532800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0532800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.6 | 0.341 | 8.36 | 0.08 | 1.37 | 0.73 | 0.304 | -1.04 | 0.142 | 21.4 | 77.61 | 1260 | -- | -- |
| 53.61 | 0.341 | 8.35 | 0.17 | 1.37 | 0.673 | 0.236 | -- | 0.163 | 21.4 | 77.82 | 1260 | -- | -- |
| 52.93 | 0.339 | 8.36 | 0.0758 | 1.37 | 0.734 | -- | -0.968 | 0.142 | 21.4 | 77.28 | 1262 | -- | -- |
| 53.8 | 0.342 | 8.35 | 0.161 | 1.36 | 0.676 | -- | -- | 0.162 | 21.4 | 77.79 | 1247 | -- | -- |
| 99.21 | 0.464 | 8.32 | -0.126 | -- | 1.55 | -- | -0.479 | 0.099 | -- | 78 | 829 | -- | -- |
| 59.59 | 0.362 | 8.34 | 0.221 | 1.41 | -- | 0.288 | -- | 0.197 | 21.6 | -- | -- | -- | -- |
| 59.9 | 0.362 | 8.34 | 0.21 | 1.41 | -- | -- | -- | 0.196 | 21.6 | -- | -- | -- | -- |
| 99.02 | 0.463 | 8.31 | 0.084 | -- | 1.57 | -- | -- | 0.16 | -- | 77 | 833 | -- | -- |
| 54.48 | 0.344 | 8.35 | -- | 1.36 | 0.699 | -- | -- | 0.144 | 21.4 | 77.71 | 1247 | -- | -- |
| 178.19 | 0.624 | 8.3 | 0.221 | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
| 61.06 | 0.366 | 8.35 | -- | 1.41 | -- | -- | -- | 0.173 | 21.6 | -- | -- | -- | -- |
| 99.19 | 0.464 | 8.31 | -- | -- | 1.58 | -- | -- | 0.152 | -- | 77.22 | 837 | -- | -- |
| 179.48 | 0.625 | 8.31 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.39 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 7 | 49.94 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 6 |
| 8 | 49.98 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 10 | 50.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 14 | 50.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 15 | 50.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 5 |
| 17 | 50.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 23 | 50.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 29 | 50.43 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 36 | 50.58 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 61 | 50.84 | humidity | 80 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 77 | 51.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 80 | 51.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 92 | 51.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 102 | 51.26 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 133 | 51.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 138 | 51.62 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 10 |
| 145 | 51.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 229 | 51.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 246 | 52.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 252 | 52.05 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 308 | 52.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 325 | 52.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 431 | 52.59 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 436 | 52.60 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 451 | 52.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 458 | 52.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 493 | 52.74 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 496 | 52.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 505 | 52.77 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 511 | 52.79 | radiation | 10 | 1440 | > th | dose independent | sin | 19 | NA |
| 560 | 52.85 | humidity | 80 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 606 | 52.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 623 | 52.96 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 13 |
| 682 | 53.03 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 731 | 53.08 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 742 | 53.10 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 17 |
| 748 | 53.11 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 3 | 5 |
| 751 | 53.11 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 14 |
| 757 | 53.12 | humidity | 90 | 720 | > th | dose independent | rect. | 14 | 12 |
| 856 | 53.24 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 13 |
| 875 | 53.26 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 16 |
| 881 | 53.27 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 1 | 7 |
| 893 | 53.28 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 14 |
| 935 | 53.32 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 5 |
| 936 | 53.32 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 23 | 8 |
| 968 | 53.35 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 972 | 53.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 975 | 53.35 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 988 | 53.36 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 991 | 53.36 | humidity | 70 | 720 | > th | dose dependent | sin | 15 | NA |