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Os05g0529000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF502 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0115) R2 : 0.664
β1 : 0.715 (0.0421) R2dD : 0.221 R2D : 0.127
β2 : 0.588 (0.0273) R2dC : 0.342 R2C : 0.316
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.346 (0.0245) R2dN8 : 0.197 R2N8 : 0.0892
σ : 0.216
deviance : 21.29
__
_____
C
peak time of C : 0.749
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.81 0.187 12.5 0.862 0.408 -0.61 0.234 0.354 0.422 23.5 24.46 11 -- --
15.75 0.185 12.5 0.827 0.407 -0.58 0.191 -- 0.43 23.6 23.41 10 -- --
15.92 0.186 12.5 0.83 0.408 -0.594 -- -0.0147 0.43 23.5 23.35 12 -- --
15.91 0.186 12.5 0.822 0.405 -0.587 -- -- 0.429 23.6 23.39 10 -- --
24.17 0.23 12.5 0.912 -- -0.881 -- 0.245 0.479 -- 23.35 12 -- --
20.94 0.215 12.6 0.726 0.589 -- 0.284 -- 0.347 0.738 -- -- -- --
21.29 0.216 12.6 0.715 0.588 -- -- -- 0.346 0.749 -- -- -- --
24.2 0.229 12.5 0.884 -- -0.871 -- -- 0.475 -- 23.1 7 -- --
32.5 0.266 12.6 -- 0.479 -0.381 -- -- 0.293 0.196 24.88 7 -- --
42.9 0.306 12.6 0.737 -- -- -- -- 0.357 -- -- -- -- --
34.78 0.276 12.6 -- 0.599 -- -- -- 0.266 0.804 -- -- -- --
43.54 0.307 12.6 -- -- -0.732 -- -- 0.332 -- 24.5 3 -- --
57.22 0.353 12.6 -- -- -- -- -- 0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.39 temperature 20.0 10 > th dose dependent rect. 5 15
3 15.53 precipitation 0.1 43200 > th dose dependent rect. 15 3
5 15.56 temperature 20.0 10 > th dose dependent rect. 5 17
9 15.64 temperature 10.0 720 > th dose dependent rect. 3 13
13 15.69 temperature 10.0 720 > th dose dependent rect. 4 11
16 15.71 precipitation 0.1 43200 < th dose independent rect. 16 2
17 15.71 precipitation 0.1 43200 < th dose dependent rect. 16 2
19 15.72 precipitation 0.1 43200 > th dose independent rect. 16 2
22 15.73 temperature 20.0 720 > th dose dependent rect. 1 15
26 15.74 temperature 20.0 10 > th dose dependent rect. 5 13
39 15.79 temperature 25.0 10 > th dose dependent rect. 23 23
47 15.82 temperature 25.0 10 > th dose dependent rect. 21 23
53 15.84 temperature 25.0 30 > th dose dependent rect. 19 23
56 15.86 temperature 25.0 10 > th dose dependent rect. 5 21
61 15.87 temperature 25.0 10 > th dose dependent rect. 5 19
63 15.88 temperature 25.0 10 > th dose dependent no NA NA
66 15.88 temperature 25.0 10 > th dose dependent rect. 3 22
68 15.88 temperature 25.0 10 > th dose dependent rect. 1 23
77 15.89 temperature 25.0 10 > th dose dependent rect. 23 21
95 15.92 temperature 20.0 720 > th dose dependent sin 4 NA
110 15.94 temperature 20.0 270 > th dose dependent sin 2 NA
123 15.97 temperature 20.0 720 > th dose dependent rect. 4 5
154 15.99 temperature 25.0 10 > th dose dependent rect. 8 23
179 16.02 radiation 10.0 1440 < th dose dependent rect. 15 16
181 16.02 temperature 10.0 720 > th dose dependent rect. 23 17
183 16.03 temperature 30.0 14400 > th dose independent rect. 17 16
184 16.03 temperature 20.0 10 > th dose dependent sin 23 NA
190 16.04 temperature 30.0 14400 > th dose independent rect. 15 19
191 16.04 radiation 10.0 1440 < th dose dependent sin 13 NA
198 16.05 temperature 30.0 14400 < th dose independent rect. 17 16
199 16.05 temperature 30.0 14400 < th dose independent rect. 15 19
222 16.08 temperature 10.0 720 > th dose dependent sin 4 NA
269 16.12 temperature 30.0 14400 > th dose independent sin 11 NA
278 16.13 temperature 30.0 14400 < th dose independent sin 11 NA
281 16.13 temperature 10.0 270 > th dose dependent sin 1 NA
288 16.13 temperature 30.0 14400 > th dose dependent rect. 17 17
294 16.14 temperature 30.0 14400 > th dose independent rect. 15 1
301 16.15 temperature 30.0 14400 < th dose independent rect. 15 1
303 16.15 temperature 30.0 14400 < th dose independent rect. 15 3
304 16.15 temperature 30.0 14400 > th dose independent rect. 15 4
333 16.15 temperature 10.0 10 > th dose dependent sin 23 NA
351 16.17 precipitation 0.1 43200 < th dose independent rect. 17 4
379 16.17 precipitation 0.1 43200 < th dose dependent rect. 17 4
444 16.21 temperature 20.0 720 > th dose dependent rect. 5 2
472 16.22 temperature 10.0 720 > th dose dependent rect. 4 7
507 16.23 temperature 30.0 720 < th dose dependent rect. 1 14
537 16.25 temperature 30.0 720 < th dose dependent sin 3 NA
548 16.26 wind 9.0 43200 > th dose independent rect. 20 2
583 16.28 radiation 10.0 1440 < th dose dependent rect. 16 8
608 16.29 radiation 10.0 1440 < th dose dependent rect. 16 2
609 16.29 radiation 10.0 1440 < th dose dependent rect. 16 4
625 16.29 radiation 10.0 1440 < th dose dependent rect. 15 22
627 16.29 temperature 25.0 10 > th dose dependent rect. 11 23
681 16.31 wind 9.0 43200 < th dose independent rect. 20 2
698 16.31 radiation 10.0 1440 < th dose dependent rect. 16 12
701 16.31 radiation 40.0 1440 < th dose dependent rect. 16 15
708 16.31 temperature 25.0 270 > th dose dependent rect. 17 22
714 16.32 temperature 30.0 14400 > th dose dependent sin 11 NA
763 16.34 atmosphere 1000.0 43200 < th dose independent rect. 19 1
771 16.34 wind 9.0 43200 > th dose dependent rect. 20 2
776 16.34 temperature 30.0 270 < th dose dependent rect. 7 12
795 16.34 temperature 25.0 10 > th dose dependent rect. 15 23
804 16.35 temperature 30.0 14400 > th dose dependent rect. 8 2
813 16.35 wind 9.0 43200 > th dose dependent rect. 20 9
832 16.35 radiation 10.0 1440 < th dose dependent rect. 13 22
835 16.36 atmosphere 1000.0 43200 > th dose independent rect. 12 1
836 16.36 atmosphere 1000.0 43200 > th dose independent rect. 19 1
837 16.36 atmosphere 1000.0 43200 < th dose independent rect. 12 1
838 16.36 temperature 30.0 14400 > th dose independent rect. 8 2
841 16.36 wind 9.0 43200 < th dose independent rect. 20 5
854 16.36 temperature 30.0 14400 > th dose dependent rect. 17 1
855 16.36 radiation 40.0 1440 < th dose dependent rect. 17 7
901 16.38 radiation 40.0 1440 < th dose dependent rect. 15 9
910 16.38 radiation 1.0 1440 > th dose dependent rect. 16 15
919 16.38 temperature 25.0 90 > th dose dependent rect. 11 23
923 16.39 wind 9.0 43200 > th dose independent rect. 20 5
924 16.39 wind 9.0 43200 < th dose independent rect. 20 8
936 16.39 radiation 40.0 1440 < th dose dependent rect. 15 5
980 16.40 temperature 30.0 14400 < th dose independent rect. 3 7