Os05g0519400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to N-ethylmaleimide sensitive factor NSF (Fragment).
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Os05g0519400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to N-ethylmaleimide sensitive factor NSF (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.01 | 0.22 | 12.3 | 0.645 | 0.268 | -0.385 | -0.27 | 0.749 | 0.186 | 3.9 | 21 | 299 | -- | -- |
| 23.95 | 0.228 | 12.3 | 0.54 | 0.285 | -0.488 | -0.552 | -- | 0.182 | 3.92 | 20.96 | 377 | -- | -- |
| 22.17 | 0.219 | 12.3 | 0.669 | 0.269 | -0.38 | -- | 0.837 | 0.192 | 3.69 | 21 | 294 | -- | -- |
| 24.84 | 0.232 | 12.3 | 0.485 | 0.272 | -0.461 | -- | -- | 0.158 | 3.18 | 20.81 | 385 | -- | -- |
| 25.89 | 0.237 | 12.3 | 0.652 | -- | -0.423 | -- | 0.724 | 0.196 | -- | 21.1 | 264 | -- | -- |
| 31.18 | 0.262 | 12.3 | 0.324 | 0.342 | -- | -0.647 | -- | 0.0387 | 4.22 | -- | -- | -- | -- |
| 32.28 | 0.266 | 12.3 | 0.33 | 0.337 | -- | -- | -- | 0.0423 | 3.81 | -- | -- | -- | -- |
| 28.58 | 0.249 | 12.3 | 0.492 | -- | -0.479 | -- | -- | 0.172 | -- | 21 | 298 | -- | -- |
| 30.37 | 0.257 | 12.3 | -- | 0.293 | -0.324 | -- | -- | 0.0867 | 3.27 | 21.36 | 404 | -- | -- |
| 38.52 | 0.29 | 12.3 | 0.344 | -- | -- | -- | -- | 0.0513 | -- | -- | -- | -- | -- |
| 35.14 | 0.277 | 12.3 | -- | 0.343 | -- | -- | -- | 0.00554 | 3.8 | -- | -- | -- | -- |
| 34.57 | 0.274 | 12.3 | -- | -- | -0.382 | -- | -- | 0.0933 | -- | 21 | 235 | -- | -- |
| 41.64 | 0.301 | 12.4 | -- | -- | -- | -- | -- | 0.0131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.26 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 18 |
| 2 | 19.30 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 14 |
| 3 | 19.41 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 21 |
| 4 | 19.42 | temperature | 20 | 270 | < th | dose independent | sin | 3 | NA |
| 7 | 19.47 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 8 | 19.49 | temperature | 20 | 270 | > th | dose independent | sin | 4 | NA |
| 13 | 19.56 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 37 | 19.93 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 39 | 19.95 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 14 |
| 42 | 20.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 48 | 20.07 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 16 |
| 55 | 20.12 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 18 |
| 114 | 20.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 122 | 20.51 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 246 | 21.07 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 15 |
| 260 | 21.12 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 15 |
| 275 | 21.18 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 305 | 21.26 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 6 |
| 315 | 21.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 477 | 21.65 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 535 | 21.78 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 621 | 21.93 | temperature | 20 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 674 | 22.03 | temperature | 20 | 30 | > th | dose independent | sin | 2 | NA |
| 725 | 22.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 796 | 22.22 | temperature | 20 | 30 | < th | dose independent | sin | 2 | NA |
| 857 | 22.32 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 6 |
| 926 | 22.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 930 | 22.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 18 |