Os05g0517900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2 , 3 cyclic phosphodiesterase, plant family protein.
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Os05g0517900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2 , 3 cyclic phosphodiesterase, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.14 | 0.421 | 9.88 | -3.58 | 0.509 | 1.69 | -0.168 | 6.5 | -0.983 | 0.221 | 1.064 | 5744 | -- | -- |
| 108.85 | 0.486 | 9.72 | -2.6 | 0.425 | 0.441 | -0.322 | -- | -0.757 | 23.9 | 13.39 | 16349 | -- | -- |
| 78.94 | 0.414 | 9.9 | -3.53 | 0.554 | 1.89 | -- | 7 | -1.02 | 0.0994 | 0.4646 | 5737 | -- | -- |
| 109.27 | 0.487 | 9.72 | -2.6 | 0.432 | 0.46 | -- | -- | -0.759 | 23.6 | 13.16 | 16397 | -- | -- |
| 85.52 | 0.431 | 9.92 | -3.65 | -- | 2.74 | -- | 9.13 | -0.973 | -- | 0.3519 | 8790 | -- | -- |
| 115.64 | 0.504 | 9.75 | -2.6 | 0.434 | -- | -0.356 | -- | -0.901 | 0.0854 | -- | -- | -- | -- |
| 116.19 | 0.505 | 9.75 | -2.58 | 0.436 | -- | -- | -- | -0.9 | 0.0956 | -- | -- | -- | -- |
| 115.84 | 0.503 | 9.74 | -2.55 | -- | 0.336 | -- | -- | -0.888 | -- | 0.3519 | 8790 | -- | -- |
| 280.12 | 0.78 | 9.67 | -- | 0.48 | 0.547 | -- | -- | -0.541 | 24 | 25.37 | 2739 | -- | -- |
| 128.14 | 0.529 | 9.74 | -2.57 | -- | -- | -- | -- | -0.893 | -- | -- | -- | -- | -- |
| 291.79 | 0.799 | 9.69 | -- | 0.403 | -- | -- | -- | -0.612 | 23.7 | -- | -- | -- | -- |
| 138.07 | 0.547 | 9.62 | -- | -- | 2.32 | -- | -- | -0.07 | -- | 2.04 | 45031 | -- | -- |
| 302.02 | 0.811 | 9.68 | -- | -- | -- | -- | -- | -0.608 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.64 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 2 | 66.66 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 8 | 67.18 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 13 | 67.53 | temperature | 20 | 43200 | < th | dose dependent | rect. | 10 | 13 |
| 23 | 67.68 | temperature | 20 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 42 | 67.87 | temperature | 20 | 43200 | < th | dose dependent | sin | 21 | NA |
| 74 | 68.15 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 118 | 68.60 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 119 | 68.60 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 122 | 68.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 125 | 68.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 143 | 68.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 148 | 68.92 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 155 | 69.01 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 240 | 69.68 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 242 | 69.68 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 251 | 69.72 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 271 | 69.84 | radiation | 40 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 314 | 70.12 | radiation | 40 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 320 | 70.15 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 357 | 70.36 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 361 | 70.37 | radiation | 40 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 365 | 70.38 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 371 | 70.40 | radiation | 40 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 375 | 70.41 | radiation | 40 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 384 | 70.44 | radiation | 40 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 388 | 70.45 | temperature | 15 | 43200 | > th | dose independent | sin | 7 | NA |
| 421 | 70.56 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 423 | 70.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 428 | 70.58 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 435 | 70.59 | radiation | 20 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 450 | 70.65 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 465 | 70.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 494 | 70.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 535 | 71.00 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 545 | 71.00 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 575 | 71.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 583 | 71.14 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 589 | 71.16 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 600 | 71.20 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 602 | 71.21 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 604 | 71.22 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 610 | 71.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 627 | 71.30 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 634 | 71.32 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 649 | 71.36 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 678 | 71.52 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 680 | 71.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 693 | 71.60 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 713 | 71.63 | temperature | 20 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 714 | 71.64 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 718 | 71.64 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 23 |
| 758 | 71.76 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 837 | 71.99 | temperature | 15 | 43200 | < th | dose independent | sin | 8 | NA |
| 888 | 72.15 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 924 | 72.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 6 |