BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0517900 Os05g0517900|J100065O17
         (140 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18930.1  | chr4:10370797-10371885 FORWARD LENGTH=182           64   2e-11
AT4G18940.1  | chr4:10372732-10373581 FORWARD LENGTH=197           62   1e-10

>AT4G18930.1 | chr4:10370797-10371885 FORWARD LENGTH=182
          Length = 181

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 42/87 (48%)

Query: 5  DQSPKEVYSVWALPPEPVRARLRGVMAGLRAAHGGPAFEPHATVVGAIXXXXXXXXXXXX 64
          ++  K+VYSVWALP E    R + +M  LR+   GP F PH TV  +             
Sbjct: 2  EEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFE 61

Query: 65 XXXXXXXPYTARVVGVARGDFFYQCIY 91
                  YTA V  V+ G FF+QC++
Sbjct: 62 SACDGLKAYTATVDRVSTGTFFFQCVF 88



>AT4G18940.1 | chr4:10372732-10373581 FORWARD LENGTH=197
          Length = 196

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 5   DQSPKEVYSVWALPPEPVRARLRGVMAGLRAAHGGPAFEPHATVVGAIXXXXXXXXXXXX 64
           D+  K +Y++WA+P + V  RL+ +M GLR+  GGPAF+PH T+VG              
Sbjct: 18  DEEEKAMYAIWAVPEDDVEDRLQRLMEGLRSEFGGPAFDPHLTLVGPFPYKLTASEAKRM 77

Query: 65  XXXXXX--XPYTARVVGVARGDFFYQCIY 91
                     Y A V  V+ G  ++QC+Y
Sbjct: 78  FKSACEGFKVYPATVDQVSAGTSYFQCLY 106



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,027,179
Number of extensions: 47761
Number of successful extensions: 84
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 52
Effective length of database: 8,693,961
Effective search space: 452085972
Effective search space used: 452085972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 106 (45.4 bits)