Os05g0509700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Single-strand binding protein/Primosomal replication protein n family protein.
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Os05g0509700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Single-strand binding protein/Primosomal replication protein n family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.49 | 0.383 | 9.39 | 0.974 | 1.86 | -0.777 | -0.482 | 0.377 | 0.147 | 20.2 | 20.98 | 600 | -- | -- |
| 66.98 | 0.381 | 9.39 | 0.931 | 1.86 | -0.826 | -0.366 | -- | 0.159 | 20.2 | 21 | 612 | -- | -- |
| 67.1 | 0.382 | 9.4 | 0.948 | 1.86 | -0.79 | -- | 0.2 | 0.138 | 20.2 | 21 | 601 | -- | -- |
| 67.22 | 0.382 | 9.4 | 0.901 | 1.86 | -0.805 | -- | -- | 0.128 | 20.2 | 20.99 | 605 | -- | -- |
| 232.64 | 0.714 | 9.37 | 0.767 | -- | -0.636 | -- | 0.114 | 0.048 | -- | 21 | 601 | -- | -- |
| 88.42 | 0.441 | 9.45 | 0.601 | 1.73 | -- | -0.336 | -- | -0.0721 | 20.2 | -- | -- | -- | -- |
| 88.76 | 0.441 | 9.45 | 0.611 | 1.73 | -- | -- | -- | -0.0725 | 20.2 | -- | -- | -- | -- |
| 232.71 | 0.714 | 9.37 | 0.742 | -- | -0.639 | -- | -- | 0.0426 | -- | 20.99 | 605 | -- | -- |
| 86.77 | 0.434 | 9.43 | -- | 1.82 | -0.541 | -- | -- | -0.00818 | 20.3 | 21.31 | 643 | -- | -- |
| 254.04 | 0.745 | 9.4 | 0.598 | -- | -- | -- | -- | -0.0922 | -- | -- | -- | -- | -- |
| 98.58 | 0.464 | 9.46 | -- | 1.73 | -- | -- | -- | -0.14 | 20.2 | -- | -- | -- | -- |
| 246.76 | 0.734 | 9.39 | -- | -- | -0.493 | -- | -- | -0.0269 | -- | 22.4 | 1503 | -- | -- |
| 263.46 | 0.758 | 9.42 | -- | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.03 | temperature | 15 | 10 | > th | dose dependent | sin | 5 | NA |
| 2 | 63.13 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 4 | 63.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 5 | 63.17 | temperature | 15 | 90 | > th | dose dependent | sin | 6 | NA |
| 46 | 65.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 61 | 66.11 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 21 |
| 63 | 66.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 82 | 66.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 114 | 67.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 115 | 67.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 19 |
| 131 | 67.69 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 16 |
| 137 | 67.72 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 171 | 67.94 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 176 | 67.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 16 |
| 216 | 68.20 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 5 |
| 237 | 68.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 263 | 68.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 265 | 68.51 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 20 |
| 270 | 68.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 273 | 68.53 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 15 |
| 318 | 68.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 325 | 68.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 14 |
| 330 | 68.76 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 348 | 68.84 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 21 |
| 352 | 68.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 353 | 68.86 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 19 |
| 354 | 68.86 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 404 | 68.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 5 |
| 435 | 69.08 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 450 | 69.11 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 23 |
| 469 | 69.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 488 | 69.21 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 494 | 69.23 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 501 | 69.25 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 507 | 69.27 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 550 | 69.39 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 569 | 69.45 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 23 |
| 683 | 69.77 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 691 | 69.78 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 712 | 69.84 | temperature | 25 | 90 | < th | dose independent | sin | 4 | NA |
| 759 | 69.98 | temperature | 25 | 90 | > th | dose independent | sin | 5 | NA |
| 845 | 70.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |