BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0509700 Os05g0509700|AK073396
         (206 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11060.1  | chr4:6754820-6756230 REVERSE LENGTH=202            236   6e-63
AT3G18580.1  | chr3:6396940-6398068 REVERSE LENGTH=218             72   3e-13

>AT4G11060.1 | chr4:6754820-6756230 REVERSE LENGTH=202
          Length = 201

 Score =  236 bits (602), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 124/208 (59%), Positives = 149/208 (71%), Gaps = 9/208 (4%)

Query: 1   MNSLSNGLLKGLRRVLEQQRKP--IDFYRKSQAWSSTVSFSDIDEKSEMGGDDDYTDSRR 58
           MNSL+  + K LR        P  I   R S++W ST     IDE  E   +++ T+ R 
Sbjct: 1   MNSLAIRVSKVLR---SSSISPLAISAERGSKSWFST---GPIDEGVEEDFEENVTE-RP 53

Query: 59  ELEPQSVDPKKGWGFRGVHRAIICGKVGQVPVQKILRNXXXXXXXXXXXXXMFDQRVVGD 118
           EL+P  VDP+KGWGFRGVHRAIICGKVGQ P+QKILRN             MFDQR+VG 
Sbjct: 54  ELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGA 113

Query: 119 ADLPKPAQWHRIAIHNDQLGAFAVQKLVKNSAVYVEGDIETRVYNDSINDQVKNIPEICL 178
            + PKPAQWHRIA+HN+ LG++AVQKL KNS+VYVEGDIETRVYNDSI+ +VK+IPEIC+
Sbjct: 114 TNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICV 173

Query: 179 RRDGKIRLIKSGESAASISLDELREGLF 206
           RRDGKIR+IK GES + IS DEL+EGL 
Sbjct: 174 RRDGKIRMIKYGESISKISFDELKEGLI 201



>AT3G18580.1 | chr3:6396940-6398068 REVERSE LENGTH=218
          Length = 217

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 83/174 (47%), Gaps = 21/174 (12%)

Query: 50  DDDYTDSRRELEPQSVDPKKGWGFR---------------GVHRAIICGKVGQVPVQKIL 94
           D D+ +    +EP++ DP   +                  G+ +AI+ G+VGQ+P+QK L
Sbjct: 39  DSDFDELESPIEPKASDPVSRFSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKL 98

Query: 95  RNXXXXXXXXXXXXXMFDQRVVGDADLPK------PAQWHRIAIHNDQLGAFAVQKLVKN 148
           ++             + + R     + P+        QWHR++++ ++L    ++ +   
Sbjct: 99  KSGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPG 158

Query: 149 SAVYVEGDIETRVYNDSINDQVKNIPEICLRRDGKIRLIKSGESAASISLDELR 202
           + +Y+EG++ET+++ D +   V+ I E+ +RR+G++  +         S  ELR
Sbjct: 159 TVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDMQQPSSAELR 212



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,385,746
Number of extensions: 173881
Number of successful extensions: 471
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)