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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0507000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.41 (0.0914) R2 : 0.361
β1 : -7.12 (0.582) R2dD : 1.69 R2D : -1.45
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.06 (0.371) R2dE : 0.744 R2E : -0.478
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -29.7 (2.71) R2dD*E : 1.4 R2D*E : -1.39
γ1 : -0.798 (0.183) R2dN8 : 0.0819 R2N8 : -0.309
σ : 1.07
deviance : 526.15
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.24
memory length : 4428
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.42
open length of G : 0.735

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
519.49 1.07 4.43 -7.47 0.654 4.22 -0.0543 -25.2 -0.752 7.85 25 4330 8.85 1.06
630.34 1.17 3.87 -3.91 0.747 3.06 0.484 -- -0.415 7.18 9.057 47520 3.77 2.22
511.18 1.05 4.45 -7.08 0.616 4.44 -- -25.8 -0.921 7.66 24.23 4384 8.66 1.13
626.45 1.17 3.88 -3.98 0.691 3.13 -- -- -0.469 7.99 8.603 47520 4.32 1.01
526.15 1.07 4.41 -7.12 -- 5.06 -- -29.7 -0.798 -- 24.24 4428 8.42 0.735
722.27 1.26 3.59 -0.697 0.689 -- -0.385 -- 0.791 7.9 -- -- -- --
722.63 1.26 3.59 -0.709 0.693 -- -- -- 0.79 7.71 -- -- -- --
651.69 1.19 3.85 -3.53 -- 2.83 -- -- -0.249 -- 5.611 47520 5.17 0.0125
705.16 1.24 3.58 -- 0.533 1.82 -- -- 0.882 8.69 6.886 47520 4.95 0.85
748.53 1.28 3.61 -0.7 -- -- -- -- 0.8 -- -- -- -- --
735.88 1.27 3.58 -- 0.688 -- -- -- 0.869 7.78 -- -- -- --
720.81 1.25 3.59 -- -- 2.02 -- -- 0.887 -- 6.886 47520 4.95 0.85
761.46 1.29 3.59 -- -- -- -- -- 0.878 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 513.89 humidity 90 43200 < th dose independent rect. 9 19
3 514.42 humidity 90 43200 < th dose independent rect. 8 21
12 515.92 humidity 90 43200 > th dose independent rect. 10 17
13 515.92 humidity 90 43200 > th dose independent rect. 9 19
20 516.34 humidity 90 43200 > th dose independent sin 17 NA
24 516.71 humidity 90 43200 < th dose independent sin 17 NA
29 517.07 humidity 90 43200 > th dose dependent rect. 13 12
34 517.42 humidity 90 43200 > th dose dependent sin 17 NA
36 517.46 humidity 90 43200 > th dose dependent rect. 12 14
42 517.72 humidity 90 43200 > th dose independent rect. 13 12
44 517.73 humidity 90 43200 > th dose independent rect. 12 14
47 517.93 humidity 90 43200 > th dose dependent rect. 10 17
50 518.05 humidity 90 43200 < th dose independent rect. 24 22
80 518.87 humidity 90 43200 < th dose independent rect. 20 23
81 518.91 humidity 90 43200 < th dose independent no NA NA
85 519.02 humidity 90 43200 < th dose independent rect. 12 23
87 519.05 humidity 90 43200 < th dose independent rect. 14 23
92 519.09 humidity 90 43200 < th dose independent rect. 16 23
95 519.23 humidity 90 43200 > th dose dependent rect. 20 4
117 519.65 humidity 90 43200 < th dose independent rect. 2 23
148 520.18 humidity 90 43200 > th dose independent no NA NA
149 520.18 humidity 90 43200 > th dose independent rect. 12 23
154 520.26 humidity 90 43200 > th dose independent rect. 21 23
159 520.34 wind 3 43200 > th dose dependent rect. 11 4
160 520.37 humidity 90 43200 > th dose independent rect. 23 23
171 520.51 humidity 90 43200 > th dose independent rect. 16 23
176 520.57 wind 5 43200 > th dose independent rect. 11 4
179 520.60 wind 5 43200 < th dose independent rect. 11 4
194 520.82 humidity 90 43200 > th dose independent rect. 1 23
248 521.62 wind 5 43200 > th dose dependent rect. 13 3
250 521.66 humidity 90 43200 > th dose dependent rect. 12 23
260 521.82 humidity 90 43200 > th dose dependent no NA NA
264 521.86 humidity 90 43200 > th dose dependent rect. 2 23
276 521.95 humidity 90 43200 > th dose dependent rect. 20 23
297 522.25 humidity 90 43200 > th dose dependent rect. 23 23
361 522.99 temperature 25 4320 > th dose dependent rect. 9 1
446 524.32 humidity 90 43200 > th dose independent rect. 21 2
505 525.31 wind 5 43200 < th dose independent rect. 10 6
530 525.67 humidity 80 43200 > th dose independent rect. 13 1
533 525.75 humidity 80 43200 < th dose independent rect. 13 1
549 526.10 humidity 90 43200 < th dose independent rect. 21 1
661 527.90 humidity 90 43200 > th dose dependent sin 5 NA
684 528.40 wind 7 43200 < th dose independent rect. 14 2
689 528.56 humidity 90 43200 > th dose independent sin 5 NA
721 529.07 humidity 90 43200 < th dose independent sin 5 NA
723 529.12 humidity 90 43200 > th dose independent rect. 18 1
748 529.49 temperature 25 4320 > th dose dependent rect. 7 5
752 529.58 wind 7 43200 < th dose independent rect. 5 12
779 530.12 wind 7 43200 > th dose independent rect. 14 2
780 530.12 wind 7 43200 < th dose independent rect. 7 10
787 530.18 humidity 90 43200 < th dose independent rect. 20 4
816 530.65 wind 7 43200 > th dose independent rect. 5 12
844 531.22 humidity 90 43200 < th dose independent rect. 18 1
887 531.77 wind 9 43200 < th dose dependent rect. 11 3
893 531.85 temperature 25 4320 < th dose independent rect. 7 3
896 531.86 temperature 25 4320 > th dose independent rect. 7 4
957 532.76 radiation 30 14400 < th dose independent rect. 16 3
990 533.38 radiation 30 14400 < th dose independent rect. 16 6