Os05g0500500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HSP20-like chaperone domain containing protein.
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Os05g0500500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HSP20-like chaperone domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.06 | 0.431 | 9.76 | -2.12 | 1.16 | -0.932 | -0.0787 | 0.652 | -0.78 | 9.49 | 84 | 119 | -- | -- |
| 85.42 | 0.43 | 9.77 | -2.09 | 1.15 | -0.925 | -0.198 | -- | -0.775 | 9.43 | 83.9 | 121 | -- | -- |
| 84.07 | 0.427 | 9.76 | -2.12 | 1.16 | -0.929 | -- | 0.664 | -0.781 | 9.5 | 84 | 122 | -- | -- |
| 85.57 | 0.431 | 9.77 | -2.09 | 1.16 | -0.909 | -- | -- | -0.771 | 9.48 | 84 | 122 | -- | -- |
| 136.15 | 0.546 | 9.79 | -2.19 | -- | -1.06 | -- | 0.437 | -0.728 | -- | 71.11 | 6 | -- | -- |
| 108.9 | 0.489 | 9.74 | -2.19 | 1.24 | -- | 0.154 | -- | -0.618 | 11.3 | -- | -- | -- | -- |
| 109 | 0.489 | 9.74 | -2.19 | 1.24 | -- | -- | -- | -0.618 | 11.3 | -- | -- | -- | -- |
| 136.84 | 0.545 | 9.79 | -2.17 | -- | -1.04 | -- | -- | -0.717 | -- | 71.12 | 2 | -- | -- |
| 198.37 | 0.656 | 9.72 | -- | 1.23 | -1.12 | -- | -- | -0.585 | 9.33 | 85 | 161 | -- | -- |
| 205.35 | 0.67 | 9.77 | -2.22 | -- | -- | -- | -- | -0.63 | -- | -- | -- | -- | -- |
| 234.92 | 0.717 | 9.69 | -- | 1.26 | -- | -- | -- | -0.374 | 11.5 | -- | -- | -- | -- |
| 258.95 | 0.749 | 9.74 | -- | -- | -1.11 | -- | -- | -0.517 | -- | 76.71 | 2 | -- | -- |
| 335.05 | 0.854 | 9.71 | -- | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.14 | humidity | 80 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 12 | 80.66 | humidity | 80 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 21 | 81.13 | humidity | 70 | 10 | > th | dose dependent | sin | 4 | NA |
| 25 | 81.25 | humidity | 90 | 90 | < th | dose independent | rect. | 20 | 19 |
| 91 | 82.80 | humidity | 90 | 90 | < th | dose independent | rect. | 19 | 22 |
| 97 | 82.88 | humidity | 80 | 30 | > th | dose independent | rect. | 2 | 16 |
| 183 | 84.08 | humidity | 90 | 90 | < th | dose independent | sin | 4 | NA |
| 236 | 84.64 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 16 |
| 237 | 84.65 | radiation | 1 | 270 | < th | dose independent | rect. | 24 | 17 |
| 286 | 85.12 | radiation | 1 | 270 | < th | dose dependent | sin | 4 | NA |
| 288 | 85.14 | radiation | 1 | 270 | < th | dose independent | sin | 4 | NA |
| 291 | 85.17 | radiation | 1 | 270 | > th | dose independent | sin | 4 | NA |
| 322 | 85.40 | humidity | 80 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 329 | 85.46 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 16 |
| 343 | 85.54 | temperature | 15 | 270 | > th | dose independent | rect. | 6 | 18 |
| 346 | 85.55 | radiation | 1 | 270 | < th | dose dependent | rect. | 24 | 18 |
| 357 | 85.63 | radiation | 1 | 270 | < th | dose independent | rect. | 23 | 20 |
| 386 | 85.74 | humidity | 80 | 90 | > th | dose dependent | no | NA | NA |
| 404 | 85.86 | humidity | 80 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 405 | 85.87 | humidity | 90 | 270 | < th | dose independent | rect. | 5 | 19 |
| 415 | 85.97 | humidity | 80 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 424 | 86.05 | humidity | 80 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 433 | 86.16 | humidity | 70 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 462 | 86.29 | temperature | 15 | 270 | > th | dose independent | rect. | 5 | 20 |
| 470 | 86.35 | radiation | 1 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 496 | 86.45 | humidity | 80 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 504 | 86.51 | humidity | 90 | 90 | < th | dose independent | rect. | 5 | 10 |
| 534 | 86.66 | radiation | 1 | 270 | > th | dose independent | rect. | 18 | 20 |
| 540 | 86.69 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 10 |
| 567 | 86.77 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 6 |
| 573 | 86.80 | humidity | 80 | 30 | > th | dose independent | rect. | 2 | 12 |
| 592 | 86.87 | humidity | 80 | 30 | > th | dose independent | rect. | 2 | 10 |
| 714 | 87.37 | humidity | 80 | 30 | > th | dose independent | sin | 3 | NA |
| 792 | 87.76 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 801 | 87.80 | humidity | 90 | 90 | > th | dose independent | rect. | 23 | 22 |
| 827 | 87.87 | humidity | 80 | 90 | > th | dose independent | rect. | 1 | 8 |
| 843 | 87.91 | temperature | 15 | 270 | > th | dose independent | rect. | 5 | 8 |
| 864 | 87.97 | wind | 1 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 867 | 87.97 | humidity | 80 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 882 | 88.05 | humidity | 90 | 90 | < th | dose independent | no | NA | NA |
| 977 | 88.38 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 8 |