BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0500500 Os05g0500500|AK110627
         (203 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54660.1  | chr5:22203950-22204986 FORWARD LENGTH=193          137   4e-33

>AT5G54660.1 | chr5:22203950-22204986 FORWARD LENGTH=193
          Length = 192

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 93/146 (63%), Gaps = 4/146 (2%)

Query: 54  EGSLFSPFLFGKFFDPADAFPLWEFEPEVLLAALRRGARTTVDWAETDSEYYLRADIPGG 113
           EGSLFSPFLFGK+FDP+DAFPLWEFE EVLLA+LR   +  VDW++TD  Y L++DIP  
Sbjct: 48  EGSLFSPFLFGKYFDPSDAFPLWEFEAEVLLASLRSLGQCRVDWSQTDQAYVLKSDIPVV 107

Query: 114 RKCDVEVSGDDAMRVVDVSGLXXXXXXXXXXXXXXXXXXXWWEHGFVRRVELPEDADWRK 173
            K +V+V  D   RV+++SG                    WWEHG+VRR+ELP DAD + 
Sbjct: 108 GKNNVQVYVDINGRVMEISG--QWNSNKKAATNSDWRSGRWWEHGYVRRLELPSDADAKY 165

Query: 174 VEAFF--DDGEGLLEIKVPKSGDAHQ 197
            EAF   +D    LEI++PK    ++
Sbjct: 166 SEAFLSNNDDYSFLEIRIPKINSKNK 191



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,939,413
Number of extensions: 129905
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)