Os05g0498800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase (Fragment).
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Os05g0498800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.24 | 0.279 | 6.88 | -0.525 | 0.664 | -0.859 | -0.223 | -0.0446 | -0.0531 | 3.85 | 19.3 | 3606 | -- | -- |
| 35.05 | 0.276 | 6.88 | -0.537 | 0.659 | -0.893 | -0.214 | -- | -0.0585 | 3.83 | 19 | 3602 | -- | -- |
| 35.2 | 0.276 | 6.88 | -0.566 | 0.665 | -0.932 | -- | -0.0479 | -0.0664 | 3.84 | 19 | 3659 | -- | -- |
| 35.18 | 0.276 | 6.88 | -0.541 | 0.661 | -0.898 | -- | -- | -0.0516 | 3.89 | 19 | 3652 | -- | -- |
| 58.31 | 0.356 | 6.89 | -0.487 | -- | -0.76 | -- | 0.239 | -0.0457 | -- | 20.2 | 2452 | -- | -- |
| 45.99 | 0.318 | 6.84 | -0.0744 | 0.68 | -- | -0.28 | -- | 0.135 | 3.7 | -- | -- | -- | -- |
| 46.22 | 0.318 | 6.83 | -0.07 | 0.68 | -- | -- | -- | 0.137 | 3.76 | -- | -- | -- | -- |
| 58.02 | 0.355 | 6.89 | -0.395 | -- | -0.708 | -- | -- | -0.0322 | -- | 21.2 | 2512 | -- | -- |
| 37.59 | 0.286 | 6.86 | -- | 0.672 | -0.501 | -- | -- | 0.0171 | 3.94 | 21.5 | 2015 | -- | -- |
| 71.71 | 0.396 | 6.84 | -0.0418 | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
| 46.34 | 0.318 | 6.83 | -- | 0.678 | -- | -- | -- | 0.144 | 3.76 | -- | -- | -- | -- |
| 61.19 | 0.364 | 6.87 | -- | -- | -0.522 | -- | -- | 0.00988 | -- | 22.1 | 2455 | -- | -- |
| 71.76 | 0.395 | 6.84 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 35.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 5 | 35.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 19 | 35.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 53 | 35.77 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 67 | 35.85 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 70 | 35.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 108 | 36.03 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 154 | 36.26 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 212 | 36.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 215 | 36.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 220 | 36.46 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 232 | 36.49 | temperature | 20 | 4320 | < th | dose dependent | rect. | 14 | 15 |
| 245 | 36.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 250 | 36.51 | temperature | 20 | 4320 | < th | dose dependent | rect. | 14 | 13 |
| 260 | 36.53 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 291 | 36.56 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 329 | 36.60 | temperature | 20 | 4320 | < th | dose dependent | sin | 14 | NA |
| 400 | 36.66 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 409 | 36.67 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 412 | 36.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 429 | 36.68 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 441 | 36.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 490 | 36.73 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 494 | 36.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 20 |
| 503 | 36.74 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 515 | 36.74 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 545 | 36.76 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 575 | 36.78 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 597 | 36.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 608 | 36.80 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 614 | 36.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 615 | 36.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 626 | 36.81 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 634 | 36.81 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 670 | 36.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 680 | 36.84 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 699 | 36.85 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 706 | 36.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 719 | 36.86 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 747 | 36.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 761 | 36.88 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 791 | 36.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 872 | 36.93 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 873 | 36.93 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 874 | 36.93 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 891 | 36.94 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 946 | 36.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 957 | 36.97 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 974 | 36.97 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |