Os05g0491700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os05g0491700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.83 | 0.663 | 7.87 | -4.75 | 1.52 | 1.82 | -0.719 | 8.01 | -0.625 | 22.3 | 21.74 | 5566 | -- | -- |
| 232.35 | 0.715 | 7.64 | -4.19 | 1.57 | -0.743 | -0.876 | -- | -0.512 | 22.5 | 21.74 | 5566 | -- | -- |
| 197.96 | 0.655 | 7.91 | -4.45 | 1.51 | 3.05 | -- | 10.6 | -0.555 | 22.1 | 21.18 | 7038 | -- | -- |
| 207.16 | 0.67 | 7.66 | -4.62 | 1.58 | -1.97 | -- | -- | -0.545 | 22.3 | 14.93 | 8603 | -- | -- |
| 335.77 | 0.853 | 7.9 | -4.2 | -- | 3.65 | -- | 12 | -0.543 | -- | 19.69 | 8320 | -- | -- |
| 237.67 | 0.723 | 7.62 | -4.05 | 1.51 | -- | -0.76 | -- | -0.438 | 22.3 | -- | -- | -- | -- |
| 239.71 | 0.725 | 7.62 | -4.01 | 1.52 | -- | -- | -- | -0.434 | 22.1 | -- | -- | -- | -- |
| 341.95 | 0.861 | 7.61 | -4.61 | -- | -2.08 | -- | -- | -0.576 | -- | 13.93 | 8242 | -- | -- |
| 662.59 | 1.21 | 7.52 | -- | 1.49 | 1 | -- | -- | 0.0185 | 21.9 | 14.93 | 8603 | -- | -- |
| 378.69 | 0.909 | 7.58 | -3.99 | -- | -- | -- | -- | -0.432 | -- | -- | -- | -- | -- |
| 664.57 | 1.21 | 7.52 | -- | 1.5 | -- | -- | -- | 0.0127 | 21.9 | -- | -- | -- | -- |
| 476.37 | 1.02 | 7.28 | -- | -- | 2.89 | -- | -- | 0.876 | -- | 35.49 | 47520 | -- | -- |
| 799.57 | 1.32 | 7.48 | -- | -- | -- | -- | -- | 0.011 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.91 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 2 | 187.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 5 | 188.39 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 6 | 188.60 | temperature | 15 | 14400 | > th | dose independent | rect. | 14 | 13 |
| 7 | 188.60 | temperature | 15 | 14400 | > th | dose independent | rect. | 12 | 15 |
| 12 | 188.73 | temperature | 15 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 16 | 188.75 | temperature | 15 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 17 | 188.76 | temperature | 15 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 18 | 188.77 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 21 |
| 23 | 188.78 | temperature | 15 | 14400 | > th | dose independent | rect. | 11 | 17 |
| 33 | 188.85 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 39 | 188.87 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 44 | 188.90 | temperature | 15 | 14400 | < th | dose independent | sin | 15 | NA |
| 51 | 188.96 | temperature | 15 | 14400 | > th | dose independent | sin | 16 | NA |
| 59 | 189.00 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 62 | 189.01 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 74 | 189.10 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 79 | 189.14 | temperature | 15 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 89 | 189.20 | temperature | 15 | 14400 | < th | dose independent | rect. | 10 | 19 |
| 91 | 189.21 | temperature | 15 | 14400 | < th | dose independent | no | NA | NA |
| 104 | 189.26 | temperature | 15 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 107 | 189.27 | temperature | 15 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 139 | 189.36 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 192 | 189.54 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 194 | 189.55 | temperature | 15 | 14400 | > th | dose independent | sin | 0 | NA |
| 199 | 189.56 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 205 | 189.58 | temperature | 15 | 14400 | < th | dose independent | sin | 2 | NA |
| 271 | 189.87 | temperature | 15 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 286 | 189.90 | temperature | 15 | 14400 | > th | dose independent | rect. | 5 | 17 |
| 311 | 190.01 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 315 | 190.04 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 319 | 190.04 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 21 |
| 322 | 190.06 | temperature | 15 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 342 | 190.14 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 344 | 190.15 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 358 | 190.20 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 360 | 190.21 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 366 | 190.22 | temperature | 15 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 377 | 190.28 | temperature | 15 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 384 | 190.31 | temperature | 15 | 14400 | > th | dose independent | no | NA | NA |
| 389 | 190.32 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 407 | 190.40 | temperature | 15 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 408 | 190.40 | humidity | 60 | 43200 | < th | dose dependent | sin | 9 | NA |
| 416 | 190.44 | temperature | 15 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 420 | 190.45 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 438 | 190.51 | temperature | 15 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 439 | 190.51 | radiation | 20 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 513 | 190.79 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 516 | 190.79 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 566 | 190.99 | humidity | 60 | 43200 | < th | dose dependent | sin | 5 | NA |
| 601 | 191.16 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 622 | 191.23 | temperature | 15 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 672 | 191.52 | temperature | 15 | 30 | > th | dose dependent | sin | 6 | NA |
| 686 | 191.59 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 703 | 191.67 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 739 | 191.82 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 781 | 191.97 | humidity | 50 | 43200 | > th | dose independent | sin | 10 | NA |
| 787 | 191.99 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 804 | 192.07 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 824 | 192.15 | humidity | 50 | 43200 | < th | dose dependent | sin | 13 | NA |
| 830 | 192.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 873 | 192.34 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 875 | 192.34 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 879 | 192.35 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 23 |
| 892 | 192.37 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 946 | 192.50 | humidity | 50 | 43200 | > th | dose independent | sin | 14 | NA |