Os05g0490900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0490900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49 | 0.329 | 14.5 | -2.04 | 0.852 | -1.04 | 0.361 | -0.15 | -0.654 | 1.94 | 23.8 | 312 | -- | -- |
| 49.03 | 0.326 | 14.5 | -2.04 | 0.851 | -1.02 | 0.345 | -- | -0.65 | 1.95 | 23.8 | 314 | -- | -- |
| 49.47 | 0.328 | 14.5 | -2.06 | 0.862 | -1.04 | -- | -0.056 | -0.651 | 1.91 | 23.7 | 278 | -- | -- |
| 49.46 | 0.328 | 14.5 | -2.07 | 0.864 | -1.02 | -- | -- | -0.657 | 1.89 | 23.77 | 278 | -- | -- |
| 75.22 | 0.404 | 14.5 | -2.15 | -- | -1.23 | -- | 0.00516 | -0.74 | -- | 27.4 | 966 | -- | -- |
| 62.63 | 0.371 | 14.4 | -1.81 | 0.773 | -- | 0.347 | -- | -0.489 | 1.68 | -- | -- | -- | -- |
| 63.11 | 0.372 | 14.4 | -1.82 | 0.773 | -- | -- | -- | -0.491 | 1.67 | -- | -- | -- | -- |
| 75.21 | 0.404 | 14.5 | -2.16 | -- | -1.24 | -- | -- | -0.748 | -- | 27.5 | 978 | -- | -- |
| 150.13 | 0.574 | 14.4 | -- | 0.768 | -0.177 | -- | -- | -0.31 | 1.57 | 23.77 | 278 | -- | -- |
| 99.5 | 0.466 | 14.4 | -1.79 | -- | -- | -- | -- | -0.473 | -- | -- | -- | -- | -- |
| 150.6 | 0.574 | 14.4 | -- | 0.74 | -- | -- | -- | -0.288 | 1.6 | -- | -- | -- | -- |
| 172.86 | 0.612 | 14.3 | -- | -- | 0.859 | -- | -- | -0.177 | -- | 61.21 | 14 | -- | -- |
| 184.08 | 0.633 | 14.4 | -- | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.51 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 3 | 47.53 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 4 | 47.56 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 9 | 47.90 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 11 | 48.01 | temperature | 30.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 12 | 48.02 | temperature | 10.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 16 | 48.09 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 22 | 48.18 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 23 | 48.20 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 29 | 48.31 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 31 | 48.33 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 39 | 48.51 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 44 | 48.58 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 51 | 48.66 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 62 | 48.84 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 75 | 48.99 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 79 | 49.02 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 90 | 49.11 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 98 | 49.19 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 109 | 49.25 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 110 | 49.26 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 126 | 49.33 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 132 | 49.36 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 138 | 49.38 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 139 | 49.38 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 157 | 49.47 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 173 | 49.51 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 208 | 49.60 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 211 | 49.60 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 212 | 49.60 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 225 | 49.64 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 232 | 49.66 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 314 | 49.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 338 | 49.82 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 364 | 49.88 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 372 | 49.90 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 383 | 49.91 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 399 | 49.96 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 410 | 49.97 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 419 | 49.98 | temperature | 25.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 520 | 50.18 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 527 | 50.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 532 | 50.20 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 547 | 50.23 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 555 | 50.25 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 611 | 50.34 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 646 | 50.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 23 |
| 708 | 50.48 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 755 | 50.54 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 12 | 16 |
| 771 | 50.56 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 806 | 50.59 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 814 | 50.60 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 825 | 50.61 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 882 | 50.66 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 892 | 50.67 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 893 | 50.67 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 895 | 50.67 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 923 | 50.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 928 | 50.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 944 | 50.69 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 999 | 50.73 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 3 | 1 |