BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0490900 Os05g0490900|AK111382
         (172 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51510.1  | chr3:19109118-19109842 FORWARD LENGTH=182          144   3e-35

>AT3G51510.1 | chr3:19109118-19109842 FORWARD LENGTH=182
          Length = 181

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 84/132 (63%), Gaps = 6/132 (4%)

Query: 40  LVAVAATEGSAKSSGEADEQVPSWARPGSDEPPPWAREXXXXXXQQEPGAVELPFFAYLL 99
           LV  AATEGS KS     E  PSWA P SDEPPPWAR        QE  + E+PFF YLL
Sbjct: 55  LVVTAATEGSKKS----KESEPSWANPDSDEPPPWARNEGRSSTSQE--SFEVPFFVYLL 108

Query: 100 XXXXXXXXXXXXXFEYANQRPVFGVVSPDSALYAPLLGFFVFTGIPTSGFLWFKAVQTAN 159
                        FEY ++ PVFG++  DS  Y P+LGFF  TGIPTS FLWFK+V+ AN
Sbjct: 109 ASAITAIAAIGSVFEYTSKNPVFGILESDSIFYTPVLGFFALTGIPTSVFLWFKSVEAAN 168

Query: 160 KEAEEQDRRDGF 171
           KEA+EQD+RDGF
Sbjct: 169 KEAQEQDKRDGF 180



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,274,800
Number of extensions: 104537
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)