Os05g0478200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os05g0478200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.53 | 0.223 | 10 | 0.0433 | 0.269 | 0.429 | 0.265 | -0.443 | 0.319 | 19.9 | 30.4 | 3968 | -- | -- |
| 22.54 | 0.221 | 10 | 0.109 | 0.269 | 0.378 | 0.255 | -- | 0.319 | 19.9 | 30.5 | 3968 | -- | -- |
| 22.73 | 0.222 | 10 | 0.029 | 0.267 | 0.426 | -- | -0.467 | 0.317 | 19.9 | 30.34 | 3967 | -- | -- |
| 22.74 | 0.222 | 10 | 0.101 | 0.268 | 0.379 | -- | -- | 0.319 | 20 | 30.45 | 3968 | -- | -- |
| 26.4 | 0.239 | 10 | -0.193 | -- | 0.581 | -- | -1.71 | 0.295 | -- | 30 | 3941 | -- | -- |
| 27.07 | 0.244 | 10 | 0.2 | 0.278 | -- | 0.253 | -- | 0.254 | 20.4 | -- | -- | -- | -- |
| 27.27 | 0.245 | 10 | 0.192 | 0.277 | -- | -- | -- | 0.254 | 20.5 | -- | -- | -- | -- |
| 26.4 | 0.239 | 10 | 0.0885 | -- | 0.42 | -- | -- | 0.257 | -- | 29.2 | 3883 | -- | -- |
| 23.01 | 0.223 | 10 | -- | 0.265 | 0.386 | -- | -- | 0.307 | 20 | 30.4 | 3967 | -- | -- |
| 31.55 | 0.262 | 10 | 0.191 | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
| 28.24 | 0.249 | 10 | -- | 0.276 | -- | -- | -- | 0.232 | 20.5 | -- | -- | -- | -- |
| 26.57 | 0.24 | 10 | -- | -- | 0.415 | -- | -- | 0.247 | -- | 29.2 | 3863 | -- | -- |
| 32.52 | 0.266 | 10 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 12 | 20 |
| 5 | 20.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 11 | 20.87 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 21 |
| 17 | 20.95 | temperature | 20 | 90 | > th | dose independent | rect. | 12 | 20 |
| 75 | 21.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 123 | 21.78 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 129 | 21.81 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 133 | 21.82 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 168 | 21.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 176 | 21.94 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 177 | 21.94 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 11 |
| 184 | 21.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 185 | 21.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 210 | 22.04 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 215 | 22.05 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 224 | 22.07 | radiation | 1 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 236 | 22.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 14 |
| 251 | 22.11 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 254 | 22.11 | radiation | 30 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 258 | 22.12 | radiation | 40 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 266 | 22.13 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 292 | 22.16 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 322 | 22.17 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 330 | 22.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 337 | 22.18 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 342 | 22.19 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 365 | 22.22 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 366 | 22.22 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 384 | 22.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 436 | 22.27 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 474 | 22.31 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 484 | 22.32 | radiation | 1 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 505 | 22.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 512 | 22.34 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 522 | 22.35 | radiation | 30 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 583 | 22.37 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 599 | 22.38 | radiation | 30 | 4320 | < th | dose dependent | rect. | 16 | 7 |
| 615 | 22.39 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 618 | 22.39 | radiation | 30 | 4320 | < th | dose dependent | rect. | 16 | 5 |
| 636 | 22.40 | temperature | 15 | 10 | > th | dose dependent | sin | 15 | NA |
| 652 | 22.41 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 658 | 22.41 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 672 | 22.42 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 708 | 22.43 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 6 |