BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0478200 Os05g0478200|009-097-G02
         (176 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51580.2  | chr3:19131167-19133016 REVERSE LENGTH=411           64   6e-11

>AT3G51580.2 | chr3:19131167-19133016 REVERSE LENGTH=411
          Length = 410

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 11  LQLAKGFSRQVNITYSNPNGVEITVKSGKGQCSLHTKQTVFDWXXXXXXXXXYATRANPI 70
           L L K  S++VNI+ S  +  +I + +GKGQC+LH   +  +          Y     PI
Sbjct: 248 LTLPKHQSQKVNISISG-DTNKIILDTGKGQCALHMYPS--EESTLPFHFPSYEKLVTPI 304

Query: 71  YGASXXXXXXXXXXXXCA--CCKFARRRASGVPYQQLEM--GDQAPNSSGVENTTSTVXX 126
            GA              A   C+  RR  SGVPY++LE+  G    N SGV +  +    
Sbjct: 305 NGAYFLIVSVIIFGGIWAFCLCRKNRRAGSGVPYRELELSGGPGLENESGVHDVETADWD 364

Query: 127 XXXXXXXXXXXXXXXXKPSDKKPSGSISANGLSLRPQTNSKDGWDVDWDD 176
                            P     S SISANGL+ R    ++DGWD DWDD
Sbjct: 365 EGWDDDWDENNAVKS--PGSAAKSVSISANGLTAR--APNRDGWDHDWDD 410



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.129    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,012,925
Number of extensions: 85461
Number of successful extensions: 115
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 84
Effective length of database: 8,584,297
Effective search space: 721080948
Effective search space used: 721080948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)