Os05g0476100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF827, plant family protein.
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Os05g0476100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF827, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.13 | 0.548 | 4.39 | -0.359 | 1.81 | 1.43 | 0.691 | -2.04 | -0.358 | 1.88 | 24.56 | 1104 | -- | -- |
| 137.48 | 0.546 | 4.35 | 0.134 | 1.81 | 1.25 | 0.557 | -- | -0.275 | 1.81 | 23.93 | 1130 | -- | -- |
| 137.78 | 0.547 | 4.39 | -0.353 | 1.8 | 1.42 | -- | -1.78 | -0.37 | 1.83 | 24.28 | 1125 | -- | -- |
| 138.48 | 0.548 | 4.34 | 0.0936 | 1.81 | 1.26 | -- | -- | -0.267 | 1.85 | 24 | 1101 | -- | -- |
| 317.39 | 0.83 | 4.4 | -0.582 | -- | 2.17 | -- | -2.26 | -0.473 | -- | 24.03 | 1067 | -- | -- |
| 183.06 | 0.634 | 4.3 | 0.487 | 2.07 | -- | 0.771 | -- | -0.082 | 1.62 | -- | -- | -- | -- |
| 185.43 | 0.638 | 4.31 | 0.462 | 2.07 | -- | -- | -- | -0.0864 | 1.62 | -- | -- | -- | -- |
| 320.75 | 0.834 | 4.34 | -0.0397 | -- | 1.99 | -- | -- | -0.322 | -- | 24 | 1071 | -- | -- |
| 138.68 | 0.548 | 4.34 | -- | 1.81 | 1.27 | -- | -- | -0.274 | 1.85 | 24 | 1101 | -- | -- |
| 446.57 | 0.987 | 4.28 | 0.545 | -- | -- | -- | -- | -0.0408 | -- | -- | -- | -- | -- |
| 191.05 | 0.647 | 4.32 | -- | 2.08 | -- | -- | -- | -0.138 | 1.63 | -- | -- | -- | -- |
| 320.8 | 0.834 | 4.34 | -- | -- | 1.98 | -- | -- | -0.319 | -- | 24 | 1071 | -- | -- |
| 454.41 | 0.995 | 4.29 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 4 | 130.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 5 | 130.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 6 | 131.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 67 | 134.22 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 80 | 134.64 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 98 | 135.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 102 | 135.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 157 | 136.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 186 | 137.80 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 191 | 137.90 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 250 | 139.10 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 276 | 139.57 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 8 |
| 280 | 139.71 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 336 | 140.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 368 | 141.41 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 15 |
| 373 | 141.50 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 6 |
| 374 | 141.51 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 8 |
| 400 | 141.89 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 402 | 141.92 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 5 |
| 448 | 142.07 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 7 |
| 476 | 142.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 497 | 142.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 518 | 142.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 519 | 142.37 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 560 | 142.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 764 | 143.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 863 | 143.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 994 | 143.91 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 15 |