Os05g0474900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function Cys-rich family protein.
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Os05g0474900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function Cys-rich family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.36 | 0.201 | 11.1 | 0.133 | 0.911 | -0.429 | 0.0405 | 0.335 | 0.00919 | 1.16 | 21.08 | 1434 | -- | -- |
| 18.43 | 0.2 | 11.1 | 0.0217 | 0.915 | -0.396 | 0.0599 | -- | -0.0251 | 1.19 | 21.8 | 1416 | -- | -- |
| 18.29 | 0.199 | 11.1 | 0.146 | 0.911 | -0.422 | -- | 0.415 | 0.00834 | 1.16 | 22.23 | 1431 | -- | -- |
| 18.44 | 0.2 | 11.1 | 0.0211 | 0.915 | -0.396 | -- | -- | -0.0248 | 1.17 | 21.87 | 1421 | -- | -- |
| 41.02 | 0.3 | 11.1 | 0.266 | -- | -1.17 | -- | 0.946 | 0.112 | -- | 22.23 | 1431 | -- | -- |
| 24.11 | 0.23 | 11.2 | -0.121 | 0.882 | -- | 0.0248 | -- | -0.117 | 1.12 | -- | -- | -- | -- |
| 24.12 | 0.23 | 11.2 | -0.122 | 0.882 | -- | -- | -- | -0.117 | 1.12 | -- | -- | -- | -- |
| 40.79 | 0.299 | 11.1 | 0.153 | -- | -1.21 | -- | -- | 0.0934 | -- | 18.77 | 9075 | -- | -- |
| 18.45 | 0.2 | 11.1 | -- | 0.917 | -0.392 | -- | -- | -0.0264 | 1.18 | 21.98 | 1421 | -- | -- |
| 72.39 | 0.398 | 11.1 | -0.0881 | -- | -- | -- | -- | -0.0994 | -- | -- | -- | -- | -- |
| 24.51 | 0.232 | 11.2 | -- | 0.88 | -- | -- | -- | -0.103 | 1.12 | -- | -- | -- | -- |
| 41.38 | 0.301 | 11.1 | -- | -- | -1.17 | -- | -- | 0.0716 | -- | 18.77 | 9075 | -- | -- |
| 72.6 | 0.398 | 11.1 | -- | -- | -- | -- | -- | -0.0896 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 7 | 17.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 8 | 17.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 10 | 17.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 11 | 17.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 27 | 17.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 19 |
| 28 | 17.99 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 29 | 17.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 64 | 18.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 113 | 18.07 | temperature | 20 | 1440 | > th | dose dependent | sin | 22 | NA |
| 117 | 18.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 147 | 18.09 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 225 | 18.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 271 | 18.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 350 | 18.20 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 2 |
| 397 | 18.24 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 432 | 18.26 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 12 |
| 477 | 18.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 486 | 18.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 659 | 18.36 | temperature | 30 | 1440 | < th | dose dependent | sin | 23 | NA |
| 678 | 18.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 679 | 18.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 912 | 18.44 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 935 | 18.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 997 | 18.47 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |