BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0474900 Os05g0474900|AK102680
(554 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10980.1 | chr3:3438810-3440501 FORWARD LENGTH=564 546 e-156
AT5G05350.1 | chr5:1585757-1587337 FORWARD LENGTH=527 526 e-149
AT1G11380.1 | chr1:3832695-3833921 FORWARD LENGTH=255 60 3e-09
>AT3G10980.1 | chr3:3438810-3440501 FORWARD LENGTH=564
Length = 563
Score = 546 bits (1408), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/568 (52%), Positives = 375/568 (66%), Gaps = 23/568 (4%)
Query: 1 MVSNGNEDLKADVELVESTTVDNDTGAPGASTLPT--QGVPRQGKQRNGFLNFCNRFSSG 58
M SN + +LKA++E ++ N P + T + + GK R ++ SS
Sbjct: 1 MGSNCDGNLKAEIEESNGSSGKNTKVPPCPLDVSTSRRTLIGDGKPRRWSISALPDASSR 60
Query: 59 DRFKKLGPSPSFKFRQLALERDEFSRSIHSDSHDNHEHFQ------FIRKINWGHLWVMC 112
+ K G SPS KF+++A +RDE SRS+ S S+ + +F+ RKI+W L M
Sbjct: 61 FQLLKFG-SPSAKFKKMAEDRDEVSRSVTSSSNGSSHNFRERISGVLHRKIDWSSLMNMG 119
Query: 113 KDWIKEPLNMALFAWIACVTVSGAILFLVMTGMLNRALPSKSQRDAWFEVNNQILNALFT 172
K+WI+ P+NMALF WI V VSGAILF+VMTGMLN ALP KSQRDAWFEVNNQILN LFT
Sbjct: 120 KEWIRNPINMALFVWILVVAVSGAILFMVMTGMLNHALPKKSQRDAWFEVNNQILNGLFT 179
Query: 173 LMCLYQHPKRIYYFVLLCRWEQKDVLVLRKTYCKNGTYKPNEWMHMMXXXXXXXXXCFAQ 232
LMCLYQHPKR Y+ VLLCRW+ D+ LRK YCK+GTYKPNEWMH+M CFAQ
Sbjct: 180 LMCLYQHPKRFYHLVLLCRWKHDDITKLRKAYCKDGTYKPNEWMHIMVVVILLHLNCFAQ 239
Query: 233 YALCGLNLGYRRSERPPIGVGLTISVAIGAAAFAGLYNIISPLGKDYDTELTEVDQEAQT 292
YALCGLN+GYRRSERPPIGV + IS AIGA A AGLY I+SPLGKDY+ + + + +
Sbjct: 240 YALCGLNVGYRRSERPPIGVAICISAAIGAPAVAGLYTILSPLGKDYNDSNEDEENQLKQ 299
Query: 293 ELTRPATSRTSLEKRYSFIQSE----ERRFVESRPEWVGGLMDFWDNISLAYLSIFCSCC 348
R +LE+RYSF + + S P+W GG++D WD+ISLAYLS+FC+ C
Sbjct: 300 REEGSVNRRFTLERRYSFASASTGVGDGMVPVSDPQWSGGILDIWDDISLAYLSLFCTFC 359
Query: 349 VFGWNMQRLGFGNMYVHIATFMLFCLAPFFIFNLAAVNINNENLREALGLTGLALCFFGL 408
VFGWNM+R+GFGNMYVHIATF+LFCLAPFFIFNLAAVNI+NE +REALG++G+ LC FGL
Sbjct: 360 VFGWNMERVGFGNMYVHIATFILFCLAPFFIFNLAAVNIDNETVREALGISGILLCVFGL 419
Query: 409 LYGGFWRIQMRKRFNLPANNFCCRSAEATDCFQWLCCSSCSLAQEVRTADYYDIAEDR-- 466
LYGGFWRIQMRKRF LP+ NFC A DC WLCC CSLAQEVRTA+ Y+I ED+
Sbjct: 420 LYGGFWRIQMRKRFKLPSYNFCFGRAAIADCALWLCCCWCSLAQEVRTANSYEIVEDKFC 479
Query: 467 SYTEQITARSQHVMTPLSREDGL--PLF--RSNPGSPYRSSTASPSIFIMEXXXXXXXXX 522
E+ S ++++PL REDG+ P F S+P + +S+ SPS F E
Sbjct: 480 QRKEEKNMVSPNLVSPLPREDGVFDPRFGLGSSPKNISGASSPSPSRFWKE----AHSPN 535
Query: 523 XXXXXXXXXTMGDRTMKAPTPSVLHRDG 550
D + P+P +HR+
Sbjct: 536 VQTPREKEEVKSDVALTPPSPLSIHREA 563
>AT5G05350.1 | chr5:1585757-1587337 FORWARD LENGTH=527
Length = 526
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 275/491 (56%), Positives = 328/491 (66%), Gaps = 27/491 (5%)
Query: 67 SPSFKFRQLALERDEFSRSIHSDSHDNHEHFQFIRKINWGHLWVMCKDWIKEPLNMALFA 126
SPS + +++A ERDE SRS++S S +H+ RKI W L M K W++ PLNM +F
Sbjct: 55 SPSARLKRMAEERDEVSRSVNSSSSSSHDVVS-SRKIEWACLMKMGKQWLQNPLNMVMFL 113
Query: 127 WIACVTVSGAILFLVMTGMLNRALPSKSQRDAWFEVNNQILNALFTLMCLYQHPKRIYYF 186
WI V VSGAILF+VMTGMLN ALP KSQRD WFEVNNQILNALFTLMCLYQHPKR Y+
Sbjct: 114 WIFVVAVSGAILFMVMTGMLNHALPKKSQRDVWFEVNNQILNALFTLMCLYQHPKRFYHL 173
Query: 187 VLLCRWEQKDVLVLRKTYCKNGTYKPNEWMHMMXXXXXXXXXCFAQYALCGLNLGYRRSE 246
VLLCRW+Q DV LRK +CKNGTYKPNEW+HMM CFAQYALCGLNLGYRRSE
Sbjct: 174 VLLCRWKQDDVTTLRKIFCKNGTYKPNEWIHMMVVVLLLHLNCFAQYALCGLNLGYRRSE 233
Query: 247 RPPIGVGLTISVAIGAAAFAGLYNIISPLGKDYDTELTEVDQEAQTELTRPATSRTSLEK 306
RP IGV + IS AI A AGLY I+SPLGKDYD + E +Q + + SLE+
Sbjct: 234 RPAIGVAICISFAIAAPTAAGLYTILSPLGKDYDPQGDEENQVQAVGEGPVSNRKLSLER 293
Query: 307 RYSFIQSEERRFVESRPEWVGGLMDFWDNISLAYLSIFCSCCVFGWNMQRLGFGNMYVHI 366
RYSF ++ S PEW G++D W++ISLAYLS+FC+ C+FGWNM+R+GFGNMYVHI
Sbjct: 294 RYSFASND-----VSNPEWREGVLDIWEDISLAYLSLFCTFCLFGWNMERIGFGNMYVHI 348
Query: 367 ATFMLFCLAPFFIFNLAAVNINNENLREALGLTGLALCFFGLLYGGFWRIQMRKRFNLPA 426
ATF+LFCLAPFFIFNLAA+NI+NE +R+ALG TG+ LC FGLLYGGFWRIQMRKRF LP
Sbjct: 349 ATFVLFCLAPFFIFNLAAINIDNEMVRDALGYTGIVLCLFGLLYGGFWRIQMRKRFKLPG 408
Query: 427 NNFCCRSAEATDCFQWLCCSSCSLAQEVRTADYYDIAED---RSYTEQITARSQHVMTPL 483
N CC DC WL C CSLAQEVRTA+ Y+I ED + E + V++ L
Sbjct: 409 YNICCGRPAIADCTLWLFCCWCSLAQEVRTANSYEIVEDKFCKRREENSKIDDEVVVSAL 468
Query: 484 SREDGL----PLFRSNPGSPYRSSTASPSIFIMEXXXXXXXXXXXXXXXXXXTMGDRTMK 539
REDG+ L + + SST SPS GD +
Sbjct: 469 PREDGVFDPSCLPKKMTTTMIASSTLSPS--------------RQKDETCLGEKGDEALS 514
Query: 540 APTPSVLHRDG 550
P+P +HR+
Sbjct: 515 PPSPPFIHREA 525
>AT1G11380.1 | chr1:3832695-3833921 FORWARD LENGTH=255
Length = 254
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 325 WVGGLMDFWDNISLAYLSIFCSCCVFGWNMQRLGFGNMYVHIATFMLFCLAPFFIFNLAA 384
W G +MD +++ L S C C FG NM R GFG+ ++ A M+ L F+FN+ A
Sbjct: 86 WEGDVMDCFEDRHLCIESACCPCYRFGKNMTRTGFGSCFLQGAVHMI--LIAGFLFNVVA 143
Query: 385 VNINNENLREALGLTGLALCFFGLL--YGGFWRIQMRKRFNLPANNFCCRSAEATDCFQW 442
+ + LA+ F L+ Y GF+R+ +R++FN+ + + D
Sbjct: 144 FAVTKRHC-----FLYLAIAFVLLIGSYLGFFRMLIRRKFNIRGTD-----SFLDDFIHH 193
Query: 443 LCCSSCSLAQEVRTADYYDIAE 464
L C C+L QE +T + ++ +
Sbjct: 194 LVCPFCTLTQESKTLEMNNVHD 215
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,094,164
Number of extensions: 496498
Number of successful extensions: 1468
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1460
Number of HSP's successfully gapped: 3
Length of query: 554
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 450
Effective length of database: 8,255,305
Effective search space: 3714887250
Effective search space used: 3714887250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)