FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0465400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1218 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.027) R2 : 0.17
β1 : -0.0247 (0.0976) R2dD : 0.000126 R2D : -0.00916
β2 : -- (--) R2dC : -- R2C : --
β3 : 8.35 (0.902) R2dE : 1.6 R2E : -1.06
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 17.8 (2.18) R2dD*E : 1.24 R2D*E : -1.44
γ1 : -0.00685 (0.056) R2dN8 : 3.69e-05 R2N8 : -0.0103
σ : 0.489
deviance : 110.1
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 7.101
memory length : 17
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.59 0.492 2.91 -0.0259 0.0901 8.38 -0.0408 17.7 -0.00713 23.7 7.1 11 12 1.03
164.45 0.597 2.85 0.0161 0.154 6.8 0.974 -- 0.0785 23.9 10.2 51 11.9 1.32
109.6 0.488 2.91 -0.025 0.0901 8.38 -- 17.7 -0.00716 23.8 7.107 15 12 1.04
129.65 0.534 2.86 -0.179 0.0668 1.38 -- -- -0.0174 0.125 8.7 31 13.3 2.23
110.1 0.489 2.91 -0.0247 -- 8.35 -- 17.8 -0.00685 -- 7.101 17 12 1
131.53 0.538 2.86 -0.19 0.0576 -- 0.0597 -- -0.0223 0.35 -- -- -- --
131.54 0.537 2.86 -0.192 0.0581 -- -- -- -0.0224 23.7 -- -- -- --
129.93 0.533 2.86 -0.178 -- 1.35 -- -- -0.0165 -- 8.7 32 13.4 2.09
130.5 0.535 2.85 -- 0.0648 1.42 -- -- 0.00268 24 8.7 33 13.3 2.12
131.75 0.536 2.86 -0.19 -- -- -- -- -0.0217 -- -- -- -- --
132.51 0.538 2.85 -- 0.056 -- -- -- -0.00106 23.5 -- -- -- --
130.76 0.534 2.85 -- -- 1.4 -- -- 0.00328 -- 8.7 32 13.4 2.09
132.71 0.538 2.85 -- -- -- -- -- -0.00063 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.79 wind 7.0 10 > th dose dependent rect. 12 1
3 112.23 humidity 90.0 90 > th dose independent rect. 16 1
4 112.23 humidity 90.0 90 > th dose dependent rect. 16 1
6 112.30 temperature 20.0 90 < th dose independent rect. 16 2
7 112.33 temperature 20.0 90 < th dose dependent rect. 16 1
9 112.35 temperature 20.0 30 < th dose dependent rect. 16 3
10 112.36 temperature 20.0 10 < th dose independent rect. 17 1
17 112.36 temperature 20.0 10 < th dose dependent rect. 17 1
55 114.19 wind 7.0 10 > th dose independent rect. 12 1
86 117.06 temperature 20.0 90 < th dose dependent rect. 12 6
102 117.66 wind 9.0 270 > th dose dependent rect. 9 1
118 118.55 wind 3.0 90 < th dose independent rect. 17 1
122 118.67 wind 3.0 10 < th dose independent rect. 18 1
127 118.88 wind 3.0 90 < th dose dependent rect. 17 1
166 120.95 wind 7.0 1440 > th dose dependent rect. 22 2
172 121.03 temperature 20.0 270 < th dose independent rect. 13 5
174 121.07 wind 7.0 1440 > th dose independent rect. 22 2
183 121.32 wind 9.0 270 > th dose independent rect. 9 1
246 122.63 radiation 1.0 270 < th dose independent rect. 14 1
248 122.63 radiation 1.0 270 < th dose dependent rect. 14 1
253 122.76 wind 7.0 1440 < th dose independent rect. 22 2
349 123.55 wind 5.0 90 > th dose dependent rect. 22 1
358 123.62 atmosphere 1005.0 30 > th dose independent rect. 17 1
411 124.38 radiation 30.0 1440 > th dose independent rect. 16 1
437 124.50 atmosphere 1005.0 10 > th dose dependent rect. 17 1
456 124.67 wind 1.0 270 < th dose dependent rect. 24 1
466 124.77 radiation 10.0 1440 > th dose independent rect. 5 1
479 124.77 radiation 10.0 1440 > th dose dependent rect. 5 1
493 124.81 wind 7.0 90 > th dose independent rect. 22 1
512 124.82 radiation 30.0 720 > th dose dependent rect. 16 1
529 124.85 wind 1.0 10 < th dose independent rect. 4 1
534 124.87 wind 1.0 10 < th dose dependent rect. 4 1
539 124.91 humidity 60.0 90 > th dose dependent rect. 16 13
544 124.96 precipitation 0.1 10 > th dose independent rect. 3 1
548 124.96 precipitation 0.1 10 > th dose dependent rect. 3 1
562 125.04 radiation 1.0 90 < th dose dependent rect. 16 1
571 125.14 wind 3.0 720 > th dose dependent rect. 6 1
595 125.33 radiation 1.0 90 < th dose independent rect. 16 1
597 125.38 radiation 1.0 10 > th dose dependent rect. 17 1
656 125.74 wind 1.0 10 < th dose independent rect. 22 1
659 125.74 wind 1.0 10 < th dose dependent rect. 22 1
680 125.86 atmosphere 1000.0 90 < th dose dependent rect. 10 1
714 126.04 wind 5.0 90 < th dose dependent rect. 16 5
726 126.08 wind 3.0 720 > th dose independent rect. 6 1
753 126.18 wind 5.0 720 < th dose dependent rect. 5 1
788 126.34 wind 3.0 90 < th dose independent rect. 16 5
793 126.35 wind 3.0 720 > th dose dependent rect. 1 8
811 126.43 wind 1.0 1440 > th dose dependent rect. 22 1
826 126.48 wind 9.0 720 < th dose dependent rect. 2 7
836 126.52 wind 5.0 720 < th dose independent rect. 4 2
837 126.52 humidity 80.0 10 > th dose independent rect. 17 6
838 126.52 wind 9.0 1440 < th dose dependent rect. 22 1
859 126.57 wind 3.0 720 > th dose dependent rect. 3 5
887 126.64 wind 7.0 1440 < th dose independent rect. 1 4
917 126.71 wind 9.0 1440 > th dose dependent rect. 22 12
929 126.74 humidity 70.0 90 > th dose dependent rect. 16 18
932 126.76 wind 5.0 1440 < th dose independent rect. 6 1
938 126.77 wind 1.0 270 < th dose independent rect. 24 1
963 126.82 wind 7.0 1440 < th dose independent rect. 1 8