Os05g0459300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0459300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.92 | 0.521 | 7 | -1.2 | 1.29 | 0.982 | 0.895 | -1.4 | -0.459 | 1.65 | 10.05 | 1407 | -- | -- |
| 125.41 | 0.522 | 6.97 | -0.965 | 1.23 | 0.949 | 0.838 | -- | -0.359 | 1.8 | 10.54 | 1368 | -- | -- |
| 126.04 | 0.523 | 7.01 | -1.19 | 1.27 | 0.988 | -- | -1.19 | -0.457 | 1.67 | 10.55 | 1393 | -- | -- |
| 127.82 | 0.527 | 6.96 | -0.991 | 1.23 | 0.961 | -- | -- | -0.366 | 1.77 | 10.55 | 1368 | -- | -- |
| 191.89 | 0.649 | 6.9 | -0.564 | -- | -0.824 | -- | -1.03 | -0.0927 | -- | 10.55 | 1393 | -- | -- |
| 151.47 | 0.577 | 6.9 | -0.683 | 1.36 | -- | 0.985 | -- | -0.0944 | 1.59 | -- | -- | -- | -- |
| 155.34 | 0.584 | 6.9 | -0.715 | 1.36 | -- | -- | -- | -0.0999 | 1.57 | -- | -- | -- | -- |
| 169.49 | 0.606 | 6.88 | -0.526 | -- | -1.01 | -- | -- | 0.0786 | -- | 0.1499 | 294 | -- | -- |
| 145.64 | 0.562 | 6.94 | -- | 1.34 | 0.901 | -- | -- | -0.286 | 1.46 | 8.304 | 1396 | -- | -- |
| 268.1 | 0.765 | 6.89 | -0.661 | -- | -- | -- | -- | -0.0702 | -- | -- | -- | -- | -- |
| 168.81 | 0.608 | 6.89 | -- | 1.35 | -- | -- | -- | -0.0203 | 1.55 | -- | -- | -- | -- |
| 176.86 | 0.619 | 6.88 | -- | -- | -1.09 | -- | -- | 0.0492 | -- | 0.1499 | 280 | -- | -- |
| 279.61 | 0.78 | 6.87 | -- | -- | -- | -- | -- | 0.00305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 3 | 123.24 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 7 | 123.54 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 10 | 123.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 22 | 123.68 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 89 | 123.89 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 90 | 123.90 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 126 | 124.12 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 127 | 124.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 146 | 124.26 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 158 | 124.38 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 160 | 124.43 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 163 | 124.46 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 178 | 124.58 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 20 |
| 199 | 124.87 | humidity | 70 | 1440 | < th | dose dependent | rect. | 14 | 3 |
| 351 | 125.45 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 379 | 125.51 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 392 | 125.51 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 393 | 125.51 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 396 | 125.52 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 404 | 125.55 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 412 | 125.56 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 427 | 125.59 | humidity | 80 | 1440 | < th | dose dependent | sin | 18 | NA |
| 481 | 125.65 | radiation | 20 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 507 | 125.68 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 533 | 125.69 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 657 | 125.80 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 665 | 125.82 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 727 | 125.96 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 745 | 125.98 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 748 | 125.98 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 755 | 126.00 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 777 | 126.02 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 12 |
| 786 | 126.03 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 806 | 126.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 835 | 126.09 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 15 |
| 881 | 126.16 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 937 | 126.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |