FiT-DB / Search/ Help/ Sample detail
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Os05g0458100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (p59 protein) (HSP binding immunophilin) (HBI) (FKBP52 protein) (52 kDa FK506 binding protein) (FKBP59).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.74 | 0.3 | 11.6 | -0.0295 | 0.122 | -0.853 | -0.475 | 0.592 | -0.146 | 19.7 | 19.21 | 366 | -- | -- |
| 40.98 | 0.298 | 11.6 | -0.124 | 0.108 | -0.804 | -0.408 | -- | -0.165 | 19.9 | 18.84 | 367 | -- | -- |
| 41.09 | 0.299 | 11.6 | -0.104 | 0.141 | -0.827 | -- | 0.142 | -0.173 | 21.8 | 18.7 | 413 | -- | -- |
| 41.1 | 0.299 | 11.6 | -0.13 | 0.149 | -0.82 | -- | -- | -0.181 | 22.1 | 18.6 | 432 | -- | -- |
| 41.91 | 0.301 | 11.6 | -0.102 | -- | -0.779 | -- | 0.236 | -0.177 | -- | 18.83 | 339 | -- | -- |
| 51.61 | 0.337 | 11.7 | -0.328 | 0.246 | -- | 0.454 | -- | -0.323 | 4.52 | -- | -- | -- | -- |
| 52.08 | 0.338 | 11.7 | -0.332 | 0.249 | -- | -- | -- | -0.325 | 3.94 | -- | -- | -- | -- |
| 41.94 | 0.302 | 11.6 | -0.142 | -- | -0.771 | -- | -- | -0.19 | -- | 18.7 | 345 | -- | -- |
| 41.5 | 0.3 | 11.6 | -- | 0.158 | -0.871 | -- | -- | -0.158 | 21.6 | 18.5 | 436 | -- | -- |
| 55.47 | 0.348 | 11.7 | -0.322 | -- | -- | -- | -- | -0.318 | -- | -- | -- | -- | -- |
| 54.98 | 0.347 | 11.7 | -- | 0.242 | -- | -- | -- | -0.288 | 3.96 | -- | -- | -- | -- |
| 42.46 | 0.303 | 11.6 | -- | -- | -0.814 | -- | -- | -0.17 | -- | 18.5 | 346 | -- | -- |
| 58.2 | 0.356 | 11.7 | -- | -- | -- | -- | -- | -0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 2 | 37.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 3 | 38.05 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 21 | 38.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 28 | 38.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 40 | 38.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 59 | 39.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 173 | 39.89 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 183 | 39.98 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 190 | 40.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 205 | 40.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 11 |
| 212 | 40.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 6 |
| 261 | 40.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 281 | 40.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 298 | 40.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 11 |
| 393 | 40.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 420 | 40.88 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 447 | 40.97 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 19 |
| 464 | 41.01 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 516 | 41.13 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 517 | 41.13 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 529 | 41.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 530 | 41.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 534 | 41.17 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 553 | 41.20 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 564 | 41.22 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 565 | 41.22 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 582 | 41.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 586 | 41.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 593 | 41.25 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 594 | 41.25 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 606 | 41.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 654 | 41.34 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 655 | 41.34 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 15 |
| 657 | 41.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 666 | 41.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 700 | 41.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 708 | 41.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 750 | 41.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 809 | 41.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 810 | 41.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 866 | 41.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 874 | 41.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 876 | 41.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 885 | 41.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 913 | 41.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 926 | 41.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 927 | 41.54 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 965 | 41.56 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 20 |
