Os05g0457700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os05g0457700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.14 | 0.27 | 9.93 | -1.69 | 0.425 | -0.557 | 0.26 | 0.186 | -0.378 | 9.92 | 22.6 | 1180 | -- | -- |
| 33.2 | 0.268 | 9.92 | -1.62 | 0.455 | -0.546 | 0.292 | -- | -0.361 | 9.88 | 22.7 | 1015 | -- | -- |
| 33.35 | 0.269 | 9.93 | -1.7 | 0.444 | -0.542 | -- | 0.256 | -0.374 | 9.8 | 22.5 | 1012 | -- | -- |
| 33.53 | 0.27 | 9.92 | -1.61 | 0.451 | -0.549 | -- | -- | -0.36 | 9.88 | 22.7 | 1050 | -- | -- |
| 42.48 | 0.304 | 9.94 | -1.69 | -- | -0.555 | -- | 0.178 | -0.375 | -- | 22.7 | 1517 | -- | -- |
| 46.63 | 0.32 | 9.88 | -1.43 | 0.377 | -- | 0.282 | -- | -0.158 | 9.47 | -- | -- | -- | -- |
| 46.92 | 0.321 | 9.88 | -1.42 | 0.376 | -- | -- | -- | -0.158 | 9.39 | -- | -- | -- | -- |
| 42.54 | 0.304 | 9.93 | -1.62 | -- | -0.555 | -- | -- | -0.358 | -- | 22.6 | 1530 | -- | -- |
| 98.94 | 0.463 | 9.85 | -- | 0.383 | -0.113 | -- | -- | -0.0334 | 9.43 | 26.7 | 84 | -- | -- |
| 55.21 | 0.347 | 9.89 | -1.42 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 100.07 | 0.468 | 9.84 | -- | 0.378 | -- | -- | -- | 1.35e-05 | 9.68 | -- | -- | -- | -- |
| 105.62 | 0.479 | 9.85 | -- | -- | -0.169 | -- | -- | -0.0189 | -- | 26.93 | 23 | -- | -- |
| 108.56 | 0.486 | 9.85 | -- | -- | -- | -- | -- | 0.000989 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 6 | 32.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 16 | 32.81 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 19 | 32.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 24 | 32.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 25 | 32.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 36 | 32.98 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 43 | 33.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 45 | 33.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 84 | 33.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 108 | 33.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 135 | 33.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 146 | 33.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 200 | 33.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 229 | 33.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 264 | 33.72 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 265 | 33.72 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 277 | 33.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 312 | 33.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 321 | 33.87 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 331 | 33.88 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 404 | 34.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 416 | 34.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 437 | 34.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 439 | 34.17 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 451 | 34.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 457 | 34.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 462 | 34.21 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 476 | 34.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 499 | 34.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 557 | 34.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 562 | 34.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 567 | 34.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 604 | 34.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 628 | 34.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 634 | 34.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 658 | 34.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 676 | 34.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 721 | 34.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 758 | 34.69 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 806 | 34.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 865 | 34.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 918 | 34.83 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 970 | 34.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 995 | 34.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |