BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0457700 Os05g0457700|AK106240
         (416 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02130.1  | chr5:419747-421958 REVERSE LENGTH=421              291   6e-79

>AT5G02130.1 | chr5:419747-421958 REVERSE LENGTH=421
          Length = 420

 Score =  291 bits (744), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 181/429 (42%), Positives = 245/429 (57%), Gaps = 48/429 (11%)

Query: 2   NPIRSALARALLSPKPRPPRARHYATSSTGGATQPESVAAEMVRYALGGARPGSSPD--- 58
           N IR +    L+  +   P A H              VA +MV YAL  AR   S +   
Sbjct: 26  NLIRYSTPLRLIHGEISVPNANH--------------VAIQMVNYALSHARSQKSDESYA 71

Query: 59  EAMRILEQGASNLQXXXXXXXXXXXMLMLAMSTLLYRSGRRQEAMEKLKATNQVAPA--A 116
           + M +LEQ   N              ++LAMS LLY SG   EA+E+LK    +  +  A
Sbjct: 72  QGMLVLEQCLGNQPNDDQVSHDSKATVLLAMSDLLYESGNSSEAIERLKQVMTLTHSSLA 131

Query: 117 FRVAAWEATMGLCMEAGQVINTSVSPDDLVDLSIKDDNIKW-SDQGH-----LKCRVNAI 170
            RV A EA +GL +++GQ        DD   L + D+ +K   + GH     +   V AI
Sbjct: 132 IRVVAVEALVGLLIQSGQ--------DD-ASLDVADEFLKLVKESGHENLQGVVATVKAI 182

Query: 171 KGLIALLNGETESAQLFFDGCKDL--CAGVGNKQTENAVLSYCEYLHCVGDFPLATQMYE 228
           KGL  L+ G  ESA+  F G ++   C G       N  LSY EYLH  G+F LA +MY+
Sbjct: 183 KGLAELVKGNIESAESLFRGLENHESCKG-------NIALSYGEYLHATGNFELAKEMYQ 235

Query: 229 RVLEALTMEDMSGNFLATCNMVPEEVSLGATCSYGQLLSHSGKFSEAEDYLTRALKKAED 288
           + ++ +T    S   + +CNM  + VSL AT + GQL SH G F  AE  LT AL K E+
Sbjct: 236 KAIQGVTETKES---MCSCNMNLKAVSLAATFALGQLESHIGNFGVAEKTLTDALTKTEE 292

Query: 289 QFGANHPKVGIVLTCVARMYKLKAKAEGSSSIMVQEGLYRKALEVLRAPAINSEGVSKQM 348
            +G NHPKVG++LT VA MY  KAK E SSSI++QEGLYRKALE+++AP ++S+G+   M
Sbjct: 293 HYGDNHPKVGVILTAVALMYGNKAKQERSSSILIQEGLYRKALELMKAPPLDSKGII-NM 351

Query: 349 DWRDIISLARGEYAELLLIQSNRRAEGERMKEWAEHAWRNSRLTLAEALEFSGP-SKPTV 407
           + +++I+LAR  YAELLLIQ NR++EGE+MK WAE AWRN R++L+EAL  S P  K  +
Sbjct: 352 ENQEVIALARAGYAELLLIQENRKSEGEKMKSWAESAWRNKRISLSEALTLSEPLGKVAI 411

Query: 408 VDTRIGRVM 416
           +D R  RV+
Sbjct: 412 IDARTTRVL 420



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,344,039
Number of extensions: 323534
Number of successful extensions: 879
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 872
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,337,553
Effective search space: 2626329195
Effective search space used: 2626329195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)