Os05g0456900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0456900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.98 | 0.79 | 7.91 | 0.428 | 2.06 | 1.5 | 0.237 | 5.24 | -0.00787 | 15.8 | 1003 | 4245 | -- | -- |
| 303.27 | 0.811 | 7.86 | 0.715 | 2.05 | 2 | 0.27 | -- | 0.0389 | 15.7 | 1000 | 3949 | -- | -- |
| 283.04 | 0.784 | 7.91 | 0.43 | 2.07 | 1.52 | -- | 5.3 | -0.0072 | 15.7 | 1003 | 4361 | -- | -- |
| 303.04 | 0.811 | 7.86 | 0.722 | 2.07 | 1.8 | -- | -- | 0.0141 | 15.7 | 999.7 | 5169 | -- | -- |
| 518.46 | 1.06 | 7.9 | 0.363 | -- | 1.49 | -- | 5.46 | -0.036 | -- | 1003 | 4332 | -- | -- |
| 390.12 | 0.926 | 7.82 | 0.377 | 2.07 | -- | 0.335 | -- | 0.184 | 15.7 | -- | -- | -- | -- |
| 390.45 | 0.925 | 7.82 | 0.382 | 2.07 | -- | -- | -- | 0.185 | 15.7 | -- | -- | -- | -- |
| 541.55 | 1.08 | 7.86 | 0.622 | -- | 1.79 | -- | -- | -0.0445 | -- | 999.6 | 5161 | -- | -- |
| 315.65 | 0.827 | 7.87 | -- | 2.05 | 1.65 | -- | -- | -0.0441 | 15.7 | 999.6 | 5209 | -- | -- |
| 627.43 | 1.17 | 7.81 | 0.296 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 394.29 | 0.929 | 7.83 | -- | 2.06 | -- | -- | -- | 0.143 | 15.7 | -- | -- | -- | -- |
| 550.91 | 1.09 | 7.87 | -- | -- | 1.56 | -- | -- | -0.107 | -- | 1000 | 6335 | -- | -- |
| 629.74 | 1.17 | 7.82 | -- | -- | -- | -- | -- | 0.0975 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 278.68 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 2 | 278.78 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 8 | 282.98 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 12 | 283.33 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 14 | 283.36 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 21 | 283.60 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 24 | 283.74 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 27 | 283.90 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 8 | 6 |
| 85 | 285.07 | atmosphere | 1005 | 4320 | < th | dose dependent | sin | 2 | NA |
| 128 | 285.79 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 234 | 287.20 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 320 | 287.88 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 336 | 288.05 | atmosphere | 1005 | 4320 | < th | dose dependent | no | NA | NA |
| 341 | 288.07 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 354 | 288.17 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 359 | 288.22 | wind | 3 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 367 | 288.27 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 377 | 288.33 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 11 | 23 |
| 401 | 288.50 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 13 | 9 |
| 450 | 288.87 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 534 | 289.55 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 589 | 289.96 | atmosphere | 1000 | 4320 | > th | dose independent | sin | 19 | NA |
| 715 | 290.70 | atmosphere | 1000 | 4320 | < th | dose independent | sin | 19 | NA |
| 900 | 291.66 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 21 | 21 |
| 948 | 291.90 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 21 | 21 |