FiT-DB / Search/ Help/ Sample detail
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Os05g0446800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.99 | 0.149 | 11.3 | 0.467 | 0.439 | -0.375 | 0.0389 | 0.0271 | 0.0692 | 4.36 | 26.02 | 3 | -- | -- |
| 9.99 | 0.147 | 11.3 | 0.471 | 0.439 | -0.377 | 0.0478 | -- | 0.0702 | 4.36 | 26.02 | 3 | -- | -- |
| 10 | 0.147 | 11.3 | 0.463 | 0.44 | -0.374 | -- | 0.0492 | 0.0683 | 4.37 | 26.07 | 3 | -- | -- |
| 10 | 0.147 | 11.3 | 0.472 | 0.439 | -0.376 | -- | -- | 0.0702 | 4.36 | 26 | 2 | -- | -- |
| 18.58 | 0.201 | 11.3 | 0.513 | -- | -0.23 | -- | 0.102 | 0.127 | -- | 23.2 | 2 | -- | -- |
| 12.12 | 0.163 | 11.3 | 0.559 | 0.373 | -- | 0.0228 | -- | 0.151 | 4.97 | -- | -- | -- | -- |
| 12.12 | 0.163 | 11.3 | 0.559 | 0.373 | -- | -- | -- | 0.151 | 4.97 | -- | -- | -- | -- |
| 18.59 | 0.201 | 11.3 | 0.524 | -- | -0.243 | -- | -- | 0.128 | -- | 23.2 | 2 | -- | -- |
| 15.32 | 0.182 | 11.3 | -- | 0.495 | -0.553 | -- | -- | -0.00773 | 4.1 | 26.25 | 12 | -- | -- |
| 19.43 | 0.206 | 11.3 | 0.572 | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
| 20.36 | 0.211 | 11.3 | -- | 0.383 | -- | -- | -- | 0.0886 | 4.93 | -- | -- | -- | -- |
| 25.27 | 0.234 | 11.3 | -- | -- | -0.43 | -- | -- | 0.0481 | -- | 23.33 | 33 | -- | -- |
| 28.08 | 0.247 | 11.3 | -- | -- | -- | -- | -- | 0.0969 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.79 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 2 | 9.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 19 |
| 16 | 9.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 36 | 9.95 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 20 |
| 42 | 9.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 44 | 9.98 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 21 |
| 59 | 10.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 61 | 10.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 99 | 10.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 106 | 10.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 109 | 10.07 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 17 |
| 125 | 10.08 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 18 |
| 126 | 10.08 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 127 | 10.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 135 | 10.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 137 | 10.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 145 | 10.09 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 15 |
| 164 | 10.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 165 | 10.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 199 | 10.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 206 | 10.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 216 | 10.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 226 | 10.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 235 | 10.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 255 | 10.15 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 271 | 10.16 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 273 | 10.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 297 | 10.17 | temperature | 30 | 10 | < th | dose dependent | sin | 10 | NA |
| 298 | 10.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 312 | 10.18 | temperature | 20 | 1440 | > th | dose independent | sin | 3 | NA |
| 318 | 10.18 | temperature | 15 | 10 | > th | dose dependent | sin | 10 | NA |
| 341 | 10.19 | temperature | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 378 | 10.20 | temperature | 20 | 30 | > th | dose independent | rect. | 2 | 23 |
| 401 | 10.21 | temperature | 25 | 1440 | < th | dose dependent | sin | 4 | NA |
| 511 | 10.24 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 21 |
| 552 | 10.25 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 21 |
| 564 | 10.25 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 647 | 10.27 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 23 |
| 764 | 10.28 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 22 |
| 780 | 10.29 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 19 |
| 813 | 10.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 823 | 10.29 | temperature | 10 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 850 | 10.30 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 865 | 10.30 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 908 | 10.30 | temperature | 20 | 4320 | < th | dose dependent | rect. | 8 | 22 |
| 909 | 10.30 | temperature | 20 | 4320 | < th | dose dependent | rect. | 12 | 22 |
| 935 | 10.31 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 10 |
| 976 | 10.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 996 | 10.31 | temperature | 20 | 4320 | < th | dose dependent | rect. | 11 | 20 |
