BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0446800 Os05g0446800|AK099450
(644 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05700.1 | chr5:1712950-1715639 REVERSE LENGTH=633 497 e-141
AT3G11240.1 | chr3:3518665-3521092 REVERSE LENGTH=606 482 e-136
>AT5G05700.1 | chr5:1712950-1715639 REVERSE LENGTH=633
Length = 632
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 275/640 (42%), Positives = 378/640 (59%), Gaps = 44/640 (6%)
Query: 23 ESVVIDYGRRRTACGYCRSTGQTSISHGLWANSLRADDYQALLDRGWRRSGCFLYKPEME 82
ESV+ D+GRR++ CGYC+S ++SISHGL A +L DYQAL+DRGWRRSG +LYK EM+
Sbjct: 18 ESVIDDHGRRKSTCGYCKSPARSSISHGLSAQTLTVYDYQALIDRGWRRSGTYLYKHEMD 77
Query: 83 RTCCPQYTIRLKANDFICSKEQGRVLKKMQRFLDGELDPQVGSPQNKTSPTKHSLAEPMN 142
+TCCP YTIRLKA+DF+ +KEQ RV ++++RFLDG+LD Q + +S
Sbjct: 78 KTCCPPYTIRLKASDFVPTKEQQRVSRRLERFLDGKLDVQPREQRGASSS---------- 127
Query: 143 MPVSKISKTLTNDFQAAKCPNLFEEDEFISCLSSKINEAVGMSFQVGTLGSDVQLPKAVV 202
+S T AAK + + + LS I++AV + + G S++Q+PKA V
Sbjct: 128 ---GDVSDTRRKTLGAAKSEENKKVEAVMDDLSKNIDQAVQLCIRSGEFPSNMQIPKASV 184
Query: 203 KTVKPQLKKKVGGASQDKKVGEAVQDLLYTCNISFQIVAEIRRALPKEKDANHNKVVADI 262
K V ++ KK+ E + +LYT NI+F I A I+R EK+ ++ +
Sbjct: 185 KKV---------FCARRKKLAEGTEQILYTSNIAFPIAAAIKRIQTSEKEGINSAEGNRL 235
Query: 263 SPNSIAEKLAMTMECHGDIAGLAVKACNGHLNFYSVTNQTKQNKTSIIVS--THAPDXXX 320
SP +I+E L M G+ +++K C GH+NF S + ++ + + +
Sbjct: 236 SPETISEMLLSAMHKVGETPDVSIKVCKGHINFLSSAKDSFSDRDVVPNGNISRGANSLD 295
Query: 321 XXXXXXVNKNTVRVPQKRRKLEIKMRRSHFDPEEFALYQRYQ--TXXXXXXXXXXXXXXR 378
K++ ++RKLEI ++RS FDPEE LY+RYQ R
Sbjct: 296 GSETLHAKKDSENHQARKRKLEIHLKRSSFDPEEHELYKRYQLKVHNDKPGHVVESSYRR 355
Query: 379 FLVDTPIVFVPPRSGDNTVPPCGFGSFHQQYRIDGKLVAVGVVDILPKCLSSKYLFWDPD 438
FLVD+P++ V P SGD VPPCGFGSFHQQYRIDG+L+AVGVVDILPKCLSS YLFWDPD
Sbjct: 356 FLVDSPLIDVQP-SGDEKVPPCGFGSFHQQYRIDGRLIAVGVVDILPKCLSSVYLFWDPD 414
Query: 439 FAFLSLGKYTALKEIDWVKTTQEHCPNLQYYYLGYYIHSCNKMRYKAAYRPSELLCPVRF 498
+AFLSLGKY+A++EI+WV Q CP+LQYYYLGYYIHSC+KMRYKAAYRPSELLCP+RF
Sbjct: 415 YAFLSLGKYSAIQEINWVIENQARCPSLQYYYLGYYIHSCSKMRYKAAYRPSELLCPLRF 474
Query: 499 EWVCYDSAKRLLDKSLYSVLSDFAQIQDE----------MPQPQNS-HLDTELSK-NDNC 546
+WV ++ A+ +LDK Y +LSD A ++ + +P S H D E + NDN
Sbjct: 475 QWVPFEVARPMLDKKPYVILSDIAISHNQCSLLAGASETLVEPAASEHEDMEQGETNDNF 534
Query: 547 ESPIXXXXXXXXXXXXXXXXXXXXXRSESNTDVMED--CSSIIDFENVMMDLNGSRVKYK 604
+ES +E S D N+++ L GS+ +YK
Sbjct: 535 MGCSDEDEDEDEDDDDDDDDDEEMYETESEDSHIESDPGSKDNDINNILIGLYGSQYRYK 594
Query: 605 DLLGVVGRIERRHLEQLERQLSKYVKVVGKELSDRMVYSL 644
++ ++ + R+ QLE L Y KVVG ELS+RMVY +
Sbjct: 595 EMRQIITPVGRK---QLEPMLQSYRKVVGAELSERMVYEI 631
>AT3G11240.1 | chr3:3518665-3521092 REVERSE LENGTH=606
Length = 605
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/502 (49%), Positives = 324/502 (64%), Gaps = 38/502 (7%)
Query: 23 ESVVIDYGRRRTACGYCRSTGQTSISHGLWANSLRADDYQALLDRGWRRSGCFLYKPEME 82
ES+V D GR ++ CGYC+S+ + SISHGLW L +DYQALLD GWRRSGC+LYKPEME
Sbjct: 22 ESIVADCGRNKSTCGYCKSSTRFSISHGLWTERLTVNDYQALLDSGWRRSGCYLYKPEME 81
Query: 83 RTCCPQYTIRLKANDFICSKEQGRVLKKMQRFLDGELDPQVGSPQNKTSPTKHSLAEPMN 142
+TCCP YTIRLKA+DF+ SKEQ RV ++++RFLDGELD + P +T S + ++
Sbjct: 82 KTCCPSYTIRLKASDFVPSKEQQRVRRRIERFLDGELDAK---PSEQTEDQDVSFSREVS 138
Query: 143 MPVSKISKTLTNDFQAAKCPNLFEEDEFISCLSSKINEAVGMSFQVGTLGSDVQLPKAVV 202
+ V K AAK E + + LS +I+ AV Q G S+VQ+PKA V
Sbjct: 139 VSVKK-------SLGAAKREKNNELEPIMKDLSEQIDNAVQKCIQSGEFPSNVQIPKASV 191
Query: 203 KTVKPQLKKKVGGASQDKKVGEAVQDLLYTCNISFQIVAEIR--RALPKEKDANHNKVVA 260
K V +++ KK+ E +DLLYT NI+F IVA ++ + L K K+ N+
Sbjct: 192 KKV---------FSAKRKKLAEGSEDLLYTSNIAFPIVAAMKHTQTLEKGKNVEENR--- 239
Query: 261 DISPNSIAEKLAMTMECHGDIAGLAVKACNGHLNFYSVTNQTKQNKTSIIVSTHAPDXXX 320
+SP +++EKL M G+ G +VK GH+NF S T T ++ S A
Sbjct: 240 -LSPEAVSEKLLSAMNKVGEFTGFSVKVSKGHINFLSATQVTSSDRNEGEESLCA----- 293
Query: 321 XXXXXXVNKNTVRVPQKRRKLEIKMRRSHFDPEEFALYQRYQTXXXXXX--XXXXXXXXR 378
+ ++ ++ ++RKLE+ ++RS F+PEE+ LY+RYQ R
Sbjct: 294 ----TTIKSSSNKLHARKRKLEMHLKRSSFEPEEYELYKRYQMKVHNDKPESISETSYKR 349
Query: 379 FLVDTPIVFVPPRSGDN--TVPPCGFGSFHQQYRIDGKLVAVGVVDILPKCLSSKYLFWD 436
FLVDTP+ VP D+ +P CGFGSFHQQYR+D +L+AVGV+DILPKCLSSKYLFWD
Sbjct: 350 FLVDTPLTEVPSSGYDDEEKIPLCGFGSFHQQYRVDDRLIAVGVIDILPKCLSSKYLFWD 409
Query: 437 PDFAFLSLGKYTALKEIDWVKTTQEHCPNLQYYYLGYYIHSCNKMRYKAAYRPSELLCPV 496
PDFA LSLG Y+AL+EIDWVK Q HC L+YYYLGYYIHSCNKMRYKAAYRPSELLCP+
Sbjct: 410 PDFASLSLGNYSALQEIDWVKQNQAHCSTLEYYYLGYYIHSCNKMRYKAAYRPSELLCPL 469
Query: 497 RFEWVCYDSAKRLLDKSLYSVL 518
R++WV ++ AK LLDK YSVL
Sbjct: 470 RYQWVPFEVAKPLLDKKPYSVL 491
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,862,344
Number of extensions: 521131
Number of successful extensions: 1301
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1287
Number of HSP's successfully gapped: 2
Length of query: 644
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 539
Effective length of database: 8,227,889
Effective search space: 4434832171
Effective search space used: 4434832171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)