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Os05g0439400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Arm repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0263) R2 : 0.333
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.791 (0.0676) R2dC : 0.201 R2C : 0.15
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.544 (0.0554) R2dN8 : 0.182 R2N8 : 0.132
σ : 0.496
deviance : 112.6
__
_____
C
peak time of C : 16.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.73 0.44 13.9 0.376 0.741 0.435 0.51 -0.865 0.491 16.6 20.1 9 -- --
91.17 0.448 13.9 0.526 0.725 0.495 0.124 -- 0.525 16.7 20.2 8 -- --
88.29 0.441 13.9 0.399 0.742 0.449 -- -0.75 0.498 16.6 20 5 -- --
91.21 0.448 13.9 0.527 0.725 0.496 -- -- 0.525 16.7 20.06 2 -- --
116.49 0.505 13.9 0.363 -- 0.603 -- -0.584 0.459 -- 20.2 7 -- --
101.13 0.471 13.8 0.656 0.803 -- 0.177 -- 0.616 16.2 -- -- -- --
101.21 0.471 13.8 0.657 0.803 -- -- -- 0.617 16.2 -- -- -- --
110.32 0.489 13.9 0.493 -- 0.525 -- -- 0.371 -- 25.68 27 -- --
98.2 0.462 13.9 -- 0.723 0.57 -- -- 0.461 16.8 19.9 4 -- --
136.11 0.545 13.8 0.625 -- -- -- -- 0.596 -- -- -- -- --
112.6 0.496 13.9 -- 0.791 -- -- -- 0.544 16.2 -- -- -- --
113.94 0.497 13.9 -- -- 0.615 -- -- 0.281 -- 25.27 149 -- --
146.42 0.565 13.9 -- -- -- -- -- 0.526 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.23 wind 1 4320 < th dose dependent rect. 6 1
2 83.79 temperature 10 90 > th dose dependent rect. 5 23
3 83.95 temperature 20 10 > th dose independent rect. 6 22
4 84.11 temperature 20 1440 > th dose independent rect. 6 1
5 84.25 temperature 20 10 > th dose independent rect. 21 19
9 84.42 temperature 20 270 > th dose independent rect. 19 20
11 84.58 temperature 20 1440 < th dose independent rect. 5 3
12 84.65 temperature 20 1440 > th dose independent rect. 5 3
17 84.77 temperature 20 1440 < th dose independent rect. 6 1
20 84.80 wind 9 14400 < th dose independent rect. 23 4
22 84.87 wind 1 14400 > th dose independent rect. 24 2
23 84.87 temperature 15 10 > th dose dependent rect. 6 22
29 85.14 wind 1 14400 < th dose independent rect. 23 3
31 85.18 wind 1 4320 < th dose independent rect. 6 1
36 85.23 temperature 20 10 > th dose independent rect. 20 22
53 85.55 wind 1 4320 > th dose independent rect. 6 1
57 85.69 temperature 15 270 > th dose dependent rect. 18 21
64 85.80 temperature 20 1440 < th dose independent rect. 22 12
71 85.87 temperature 20 1440 > th dose independent rect. 22 12
82 86.00 temperature 20 1440 < th dose independent rect. 1 9
84 86.02 temperature 20 1440 > th dose independent rect. 1 9
89 86.04 temperature 20 1440 < th dose independent rect. 3 6
103 86.11 humidity 90 14400 > th dose dependent rect. 5 2
157 86.35 temperature 20 1440 < th dose independent sin 7 NA
160 86.36 temperature 20 1440 > th dose independent sin 7 NA
164 86.37 temperature 20 1440 < th dose independent rect. 23 1
177 86.41 wind 3 43200 < th dose dependent rect. 6 3
199 86.50 wind 3 43200 < th dose dependent rect. 6 1
217 86.55 temperature 20 1440 < th dose dependent rect. 3 2
225 86.60 temperature 20 1440 > th dose independent rect. 23 1
254 86.72 humidity 90 14400 > th dose dependent rect. 4 11
255 86.73 wind 1 14400 < th dose dependent rect. 23 3
299 86.91 humidity 50 14400 > th dose dependent rect. 5 2
319 87.00 temperature 20 4320 > th dose independent rect. 20 1
335 87.05 humidity 60 43200 < th dose independent rect. 20 13
338 87.06 temperature 20 4320 > th dose independent rect. 19 3
364 87.13 temperature 20 4320 > th dose independent rect. 18 5
377 87.16 temperature 20 10 > th dose independent rect. 21 7
384 87.16 radiation 10 4320 > th dose dependent rect. 17 14
386 87.17 humidity 60 43200 > th dose independent rect. 21 12
407 87.21 wind 3 43200 < th dose dependent rect. 5 7
416 87.24 radiation 20 14400 < th dose independent rect. 5 1
442 87.29 humidity 90 14400 > th dose dependent sin 2 NA
445 87.29 wind 3 43200 < th dose dependent rect. 5 9
467 87.35 humidity 90 14400 > th dose independent rect. 5 2
476 87.37 radiation 10 4320 > th dose dependent rect. 6 1
493 87.42 atmosphere 995 43200 < th dose independent rect. 22 16
499 87.43 atmosphere 995 43200 > th dose independent rect. 4 5
500 87.43 humidity 60 43200 < th dose independent rect. 2 7
501 87.43 atmosphere 995 43200 < th dose independent rect. 23 14
512 87.45 wind 3 14400 < th dose independent rect. 1 13
527 87.46 atmosphere 995 43200 > th dose independent rect. 3 7
529 87.46 atmosphere 995 43200 > th dose independent rect. 2 9
535 87.47 atmosphere 995 43200 > th dose independent rect. 1 11
536 87.47 atmosphere 995 43200 < th dose independent rect. 24 12
537 87.47 atmosphere 995 43200 > th dose independent rect. 22 16
544 87.48 wind 9 43200 < th dose dependent rect. 22 2
546 87.49 atmosphere 995 43200 < th dose independent rect. 1 10
547 87.49 wind 3 14400 > th dose independent rect. 1 13
548 87.49 atmosphere 995 43200 > th dose independent rect. 23 14
557 87.50 atmosphere 995 43200 > th dose independent rect. 20 18
562 87.50 atmosphere 995 43200 < th dose dependent sin 9 NA
575 87.51 temperature 25 1440 < th dose dependent rect. 7 1
591 87.53 atmosphere 995 43200 < th dose dependent rect. 4 4
594 87.53 atmosphere 995 43200 < th dose dependent rect. 21 13
597 87.54 atmosphere 995 43200 < th dose independent rect. 5 3
602 87.54 wind 1 43200 > th dose dependent rect. 22 2
607 87.55 temperature 20 4320 < th dose independent rect. 18 6
622 87.57 atmosphere 995 43200 < th dose independent rect. 4 5
628 87.57 atmosphere 995 43200 < th dose dependent rect. 2 7
632 87.58 atmosphere 995 43200 < th dose independent rect. 3 7
641 87.59 wind 3 43200 < th dose independent rect. 6 1
678 87.64 humidity 70 43200 > th dose dependent rect. 19 5
679 87.64 humidity 70 43200 < th dose dependent rect. 21 12
692 87.65 wind 3 43200 < th dose dependent rect. 5 19
694 87.66 wind 3 43200 > th dose independent rect. 6 1
695 87.66 atmosphere 995 43200 > th dose independent rect. 5 3
696 87.66 wind 3 43200 < th dose independent rect. 19 5
717 87.68 temperature 20 10 > th dose independent rect. 12 16
732 87.70 wind 3 43200 < th dose independent rect. 6 6
733 87.70 humidity 60 43200 > th dose independent rect. 2 7
752 87.73 humidity 90 14400 < th dose independent rect. 6 1
763 87.73 humidity 60 43200 < th dose dependent rect. 6 3
766 87.73 humidity 60 43200 < th dose dependent rect. 20 14
768 87.74 wind 3 43200 < th dose independent rect. 6 9
771 87.74 humidity 60 43200 < th dose dependent rect. 4 5
776 87.75 wind 3 43200 > th dose independent rect. 19 5
784 87.75 humidity 60 43200 < th dose dependent rect. 7 1
805 87.77 wind 3 43200 > th dose independent rect. 6 6
815 87.77 humidity 60 43200 < th dose dependent rect. 2 7
825 87.78 wind 9 43200 < th dose dependent rect. 22 4
830 87.79 humidity 60 43200 < th dose independent rect. 6 3
859 87.81 humidity 90 14400 > th dose independent rect. 2 14
864 87.81 humidity 50 43200 > th dose dependent rect. 21 1
891 87.84 humidity 50 43200 > th dose dependent rect. 20 3
898 87.85 wind 3 43200 > th dose independent rect. 6 9
913 87.86 temperature 20 4320 > th dose independent rect. 6 22
946 87.89 temperature 20 10 > th dose independent no NA NA
947 87.89 temperature 20 4320 < th dose independent rect. 20 1
970 87.90 wind 1 43200 > th dose dependent rect. 22 4
981 87.91 atmosphere 995 43200 < th dose independent sin 6 NA
986 87.91 temperature 20 4320 > th dose independent rect. 9 19
996 87.92 wind 3 14400 > th dose independent sin 5 NA
997 87.92 wind 3 14400 < th dose independent sin 5 NA