Os05g0438300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os05g0438300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1160.74 | 1.6 | 3.97 | 1.5 | 0.186 | -3.05 | 0.473 | -8.32 | 1.09 | 1.41 | 23.9 | 4506 | -- | -- |
| 1200.42 | 1.61 | 4.24 | 0.282 | 0.0209 | -1.82 | 0.436 | -- | 0.835 | 1.48 | 39.48 | 2432 | -- | -- |
| 1161.32 | 1.59 | 3.97 | 1.49 | 0.198 | -3.04 | -- | -8.31 | 1.08 | 23.8 | 23.89 | 4483 | -- | -- |
| 1201.24 | 1.61 | 4.24 | 0.261 | 0.0281 | -1.83 | -- | -- | 0.835 | 1.98 | 41.69 | 2436 | -- | -- |
| 1163.72 | 1.59 | 3.97 | 1.5 | -- | -3.02 | -- | -8.25 | 1.09 | -- | 23.9 | 4457 | -- | -- |
| 1265.48 | 1.67 | 4.16 | 0.975 | 0.227 | -- | 0.545 | -- | 1.21 | 1.81 | -- | -- | -- | -- |
| 1266.34 | 1.67 | 4.16 | 0.959 | 0.235 | -- | -- | -- | 1.21 | 0.563 | -- | -- | -- | -- |
| 1201.27 | 1.61 | 4.24 | 0.257 | -- | -1.84 | -- | -- | 0.834 | -- | 35.1 | 2436 | -- | -- |
| 1202.74 | 1.62 | 4.25 | -- | 0.0158 | -1.93 | -- | -- | 0.79 | 2.59 | 52.29 | 2458 | -- | -- |
| 1269.79 | 1.67 | 4.16 | 0.967 | -- | -- | -- | -- | 1.21 | -- | -- | -- | -- | -- |
| 1290.59 | 1.68 | 4.18 | -- | 0.249 | -- | -- | -- | 1.1 | 0.752 | -- | -- | -- | -- |
| 1202.75 | 1.62 | 4.25 | -- | -- | -1.94 | -- | -- | 0.788 | -- | 37.33 | 2458 | -- | -- |
| 1294.48 | 1.68 | 4.18 | -- | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1148.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 4 | 1148.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 7 | 1148.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 11 | 1148.69 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 23 | 1153.51 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 34 | 1156.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 35 | 1157.32 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 37 | 1157.33 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 51 | 1158.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 52 | 1158.64 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 58 | 1159.59 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 74 | 1159.91 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 77 | 1160.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 79 | 1160.14 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 80 | 1160.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 85 | 1160.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 90 | 1160.53 | radiation | 1 | 14400 | < th | dose dependent | sin | 15 | NA |
| 95 | 1160.56 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 157 | 1161.02 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 175 | 1161.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 191 | 1161.24 | radiation | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 215 | 1161.33 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 15 |
| 230 | 1161.42 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 239 | 1161.44 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 12 |
| 246 | 1161.48 | temperature | 25 | 4320 | < th | dose dependent | sin | 8 | NA |
| 272 | 1161.56 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 304 | 1161.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 376 | 1162.02 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 377 | 1162.02 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 4 |
| 482 | 1162.65 | temperature | 25 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 517 | 1162.86 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 6 |
| 521 | 1162.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 528 | 1162.94 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 18 |
| 547 | 1163.11 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 553 | 1163.15 | radiation | 1 | 43200 | < th | dose independent | sin | 18 | NA |
| 555 | 1163.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 578 | 1163.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 586 | 1163.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 594 | 1163.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 601 | 1163.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 604 | 1163.24 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 606 | 1163.24 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 631 | 1163.26 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 674 | 1163.35 | radiation | 1 | 43200 | > th | dose independent | sin | 18 | NA |
| 756 | 1163.48 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 851 | 1163.62 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 874 | 1163.65 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 12 |
| 995 | 1164.19 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |