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Os05g0437200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF502 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0177) R2 : 0.0039
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0499 (0.0373) R2dN8 : 0.00503 R2N8 : 0.0039
σ : 0.334
deviance : 51.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.08 0.262 11.2 -0.673 0.449 0.237 -0.171 -0.495 -0.073 0.61 19.5 63 -- --
31.91 0.263 11.2 -0.607 0.454 0.287 -0.00692 -- -0.0564 0.484 19.2 53 -- --
31.12 0.262 11.2 -0.652 0.454 0.243 -- -0.432 -0.0676 0.522 19.4 48 -- --
31.82 0.263 11.2 -0.602 0.449 0.29 -- -- -0.0592 0.573 19.4 13 -- --
40.98 0.298 11.2 -0.645 -- 0.344 -- -0.149 -0.0714 -- 19.5 731 -- --
34.5 0.275 11.2 -0.516 0.399 -- 0.0578 -- -0.0125 0.47 -- -- -- --
34.52 0.275 11.2 -0.519 0.399 -- -- -- -0.0128 0.487 -- -- -- --
41.02 0.298 11.2 -0.645 -- 0.404 -- -- -0.0728 -- 19.4 842 -- --
40.69 0.297 11.2 -- 0.432 0.178 -- -- 0.0328 0.422 19.7 27 -- --
44.5 0.312 11.2 -0.505 -- -- -- -- -0.00614 -- -- -- -- --
41.61 0.302 11.2 -- 0.391 -- -- -- 0.045 0.42 -- -- -- --
45.03 0.313 11.2 -- -- -0.272 -- -- 0.113 -- 26.5 40 -- --
51.23 0.334 11.2 -- -- -- -- -- 0.0499 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.77 radiation 1.0 1440 < th dose independent rect. 9 3
2 28.77 radiation 1.0 1440 < th dose dependent rect. 9 3
3 28.80 radiation 1.0 1440 < th dose independent rect. 10 1
4 28.80 radiation 1.0 1440 < th dose dependent rect. 10 1
5 28.85 radiation 1.0 1440 > th dose independent rect. 9 4
41 29.61 radiation 1.0 1440 > th dose independent rect. 11 1
43 29.66 radiation 1.0 1440 > th dose independent rect. 9 1
46 29.72 radiation 1.0 1440 < th dose independent rect. 13 1
47 29.72 radiation 1.0 1440 < th dose dependent rect. 13 1
64 29.91 radiation 1.0 1440 > th dose independent rect. 13 1
72 30.05 wind 1.0 1440 < th dose dependent rect. 6 1
75 30.09 humidity 90.0 14400 > th dose dependent rect. 6 1
79 30.25 humidity 90.0 4320 < th dose independent rect. 7 2
83 30.34 humidity 90.0 4320 > th dose independent rect. 7 2
84 30.35 humidity 80.0 14400 > th dose dependent rect. 4 3
85 30.35 humidity 80.0 14400 > th dose dependent rect. 3 5
92 30.46 temperature 20.0 10 > th dose independent sin 7 NA
96 30.50 temperature 20.0 10 < th dose independent rect. 22 15
99 30.51 wind 1.0 1440 < th dose independent rect. 6 1
110 30.55 radiation 20.0 1440 < th dose dependent rect. 11 1
116 30.58 temperature 20.0 270 > th dose independent rect. 22 9
117 30.59 temperature 20.0 90 > th dose independent rect. 24 9
121 30.66 temperature 20.0 90 > th dose independent sin 8 NA
122 30.66 temperature 20.0 90 > th dose independent rect. 11 23
128 30.70 wind 1.0 1440 > th dose independent rect. 6 1
132 30.71 humidity 90.0 14400 > th dose independent rect. 4 4
133 30.71 temperature 20.0 10 > th dose independent rect. 12 22
134 30.71 radiation 10.0 4320 < th dose dependent rect. 19 10
144 30.75 temperature 20.0 10 < th dose independent sin 7 NA
168 30.78 temperature 20.0 90 > th dose independent rect. 12 21
180 30.82 humidity 50.0 14400 > th dose dependent rect. 5 2
183 30.83 humidity 90.0 14400 > th dose independent rect. 3 6
204 30.88 radiation 10.0 4320 < th dose dependent rect. 24 5
209 30.89 precipitation 0.1 270 > th dose independent rect. 2 2
215 30.89 precipitation 0.1 270 > th dose dependent rect. 2 2
221 30.91 humidity 90.0 14400 < th dose independent rect. 4 4
227 30.91 radiation 10.0 4320 < th dose dependent rect. 22 7
235 30.93 temperature 20.0 10 > th dose independent rect. 1 8
273 30.99 temperature 20.0 1440 > th dose independent rect. 6 1
294 31.01 temperature 20.0 10 < th dose dependent sin 6 NA
301 31.02 temperature 20.0 10 < th dose independent rect. 16 21
323 31.05 radiation 1.0 4320 > th dose independent rect. 7 1
373 31.10 temperature 20.0 90 > th dose independent rect. 24 23
393 31.13 wind 1.0 270 < th dose dependent rect. 24 1
413 31.15 humidity 50.0 14400 > th dose dependent rect. 22 10
425 31.16 radiation 10.0 4320 < th dose dependent rect. 4 1
434 31.17 temperature 20.0 90 > th dose independent rect. 17 16
468 31.21 temperature 20.0 1440 < th dose independent rect. 6 1
475 31.21 temperature 20.0 90 < th dose independent rect. 9 21
510 31.24 wind 9.0 720 > th dose independent rect. 18 16
519 31.25 temperature 20.0 90 < th dose independent rect. 23 6
532 31.26 temperature 20.0 10 > th dose independent rect. 17 16
534 31.26 humidity 70.0 14400 < th dose dependent rect. 21 1
564 31.27 humidity 90.0 14400 > th dose dependent sin 3 NA
565 31.27 temperature 25.0 1440 < th dose dependent rect. 8 1
590 31.29 humidity 80.0 14400 > th dose dependent sin 8 NA
598 31.30 temperature 20.0 90 > th dose independent rect. 19 14
625 31.31 wind 9.0 720 > th dose dependent rect. 18 16
627 31.32 temperature 20.0 10 > th dose independent rect. 21 12
657 31.33 humidity 90.0 14400 > th dose dependent rect. 22 1
663 31.33 humidity 90.0 14400 > th dose dependent rect. 3 16
667 31.34 temperature 20.0 270 > th dose independent rect. 21 22
679 31.34 temperature 20.0 90 < th dose dependent rect. 23 13
700 31.35 temperature 20.0 10 > th dose independent rect. 24 23
735 31.36 humidity 90.0 14400 > th dose dependent rect. 3 22
757 31.38 humidity 90.0 14400 > th dose dependent rect. 15 19
764 31.39 humidity 90.0 14400 > th dose independent sin 5 NA
767 31.39 temperature 20.0 10 < th dose independent rect. 22 8
770 31.39 radiation 1.0 4320 < th dose independent rect. 19 10
799 31.40 temperature 20.0 90 < th dose independent rect. 21 9
806 31.40 temperature 20.0 10 > th dose independent rect. 17 23
826 31.40 humidity 90.0 14400 > th dose dependent rect. 22 22
829 31.41 humidity 60.0 14400 < th dose independent rect. 6 1
831 31.41 humidity 60.0 14400 < th dose independent rect. 20 1
833 31.41 radiation 20.0 14400 > th dose independent rect. 17 1
876 31.41 temperature 20.0 10 < th dose independent rect. 22 10
890 31.41 precipitation 0.1 30 > th dose independent rect. 3 17
903 31.41 humidity 50.0 14400 > th dose dependent rect. 22 1
906 31.41 humidity 60.0 14400 < th dose dependent rect. 6 1
910 31.41 radiation 20.0 14400 > th dose dependent rect. 17 1
981 31.42 radiation 1.0 4320 > th dose independent rect. 6 3
997 31.42 humidity 90.0 14400 > th dose dependent no NA NA