BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0437200 Os05g0437200|AK121867
(260 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43130.1 | chr1:16228661-16231158 REVERSE LENGTH=262 381 e-106
AT2G20120.1 | chr2:8687568-8689321 REVERSE LENGTH=269 321 3e-88
AT2G20130.1 | chr2:8690614-8692234 REVERSE LENGTH=257 318 2e-87
AT2G18460.1 | chr2:8001320-8002854 FORWARD LENGTH=275 313 7e-86
>AT1G43130.1 | chr1:16228661-16231158 REVERSE LENGTH=262
Length = 261
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/265 (73%), Positives = 218/265 (82%), Gaps = 12/265 (4%)
Query: 1 MPEEKEYAPVPLGQA--PEAVDPEDPVKSPPRPTSPANSTRKACFAVLQSWVSRKFMTGC 58
M E KE L Q P DP+D KSPP SP +STRKAC+ VLQSWVS+KFMTG
Sbjct: 1 MAEGKEATTSSLSQGLTPHQ-DPDDAPKSPPN--SPNSSTRKACYGVLQSWVSKKFMTGF 57
Query: 59 VVLFPVAVTFFITWWFVKFVDGFFSPLYAKLGFDIFGLGFLTSLLFIFLVGIFVSSWVGS 118
VVLFPVAVTF ITWWF++FVDGFFSP+Y LG DIFGLGF+TS+LF F VGIF SSW+GS
Sbjct: 58 VVLFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGS 117
Query: 119 TVFWIGEWFIKKMPFVRHIYSASKQVSTAVSPDQNTTAFKEVAIISHPRIGEYAFGFITS 178
TVFW+GE FI++MPFV+HIYSASKQ+STA+SPDQNTTAFKEVAII HPRIGEYAFGFITS
Sbjct: 118 TVFWLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITS 177
Query: 179 TMILQTDKGDEELCSVYVPTNHLYIGDIFLVRSEEIIRPNLSIREGIEIIVSGGMTMPQV 238
++ LQTD G+EELCSVYVPTNHLYIGD+FLV SEEIIRPNLSIREGIEIIVS GMTMPQV
Sbjct: 178 SVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQV 237
Query: 239 IA----APGQTPHKGQSTR--LNRM 257
I+ +TPH+ S R LNR+
Sbjct: 238 ISHVDRTTNRTPHQ-HSLRVPLNRL 261
>AT2G20120.1 | chr2:8687568-8689321 REVERSE LENGTH=269
Length = 268
Score = 321 bits (822), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 140/195 (71%), Positives = 176/195 (90%)
Query: 46 LQSWVSRKFMTGCVVLFPVAVTFFITWWFVKFVDGFFSPLYAKLGFDIFGLGFLTSLLFI 105
++ W S+KFMTGCV+L P+A+TF+ITWWF+ FVDGFFSP+YA+LG ++FG GFLTS+ FI
Sbjct: 59 IRGWASKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFGFGFLTSIAFI 118
Query: 106 FLVGIFVSSWVGSTVFWIGEWFIKKMPFVRHIYSASKQVSTAVSPDQNTTAFKEVAIISH 165
FLVG+F+SSW+G++V +GEWFIK+MPFVRHIY+ASKQ+STA+SPDQNT AFKEVAII H
Sbjct: 119 FLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRH 178
Query: 166 PRIGEYAFGFITSTMILQTDKGDEELCSVYVPTNHLYIGDIFLVRSEEIIRPNLSIREGI 225
PR+GEYAFGFITST++LQ +EELC VYVPTNHLYIGD+ LV S ++IRPNLS+REGI
Sbjct: 179 PRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDLLLVNSNDVIRPNLSVREGI 238
Query: 226 EIIVSGGMTMPQVIA 240
EI+VSGGM+MPQ+++
Sbjct: 239 EIVVSGGMSMPQILS 253
>AT2G20130.1 | chr2:8690614-8692234 REVERSE LENGTH=257
Length = 256
Score = 318 bits (815), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 142/195 (72%), Positives = 174/195 (89%)
Query: 46 LQSWVSRKFMTGCVVLFPVAVTFFITWWFVKFVDGFFSPLYAKLGFDIFGLGFLTSLLFI 105
++ W S+KFMTGCV+L P+AVTF+ TWWF+ FVDGFFSP+YA LG +IFG GFLTS+ FI
Sbjct: 49 IRGWASKKFMTGCVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFGFGFLTSIAFI 108
Query: 106 FLVGIFVSSWVGSTVFWIGEWFIKKMPFVRHIYSASKQVSTAVSPDQNTTAFKEVAIISH 165
FLVG+F+SSW+G++V +GEWFIK+MPFVRHIY+ASKQ+STA+SPDQNT AFKEVAII H
Sbjct: 109 FLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRH 168
Query: 166 PRIGEYAFGFITSTMILQTDKGDEELCSVYVPTNHLYIGDIFLVRSEEIIRPNLSIREGI 225
PR+GEYAFGFITST++LQ +EELC VYVPTNHLYIGDI LV S ++IRPNLS+REGI
Sbjct: 169 PRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGI 228
Query: 226 EIIVSGGMTMPQVIA 240
EI+VSGGM+MPQ+++
Sbjct: 229 EIVVSGGMSMPQILS 243
>AT2G18460.1 | chr2:8001320-8002854 FORWARD LENGTH=275
Length = 274
Score = 313 bits (801), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 147/236 (62%), Positives = 191/236 (80%), Gaps = 4/236 (1%)
Query: 17 EAVDPEDPVKS-PPRP-TSPAN-STRKACFAVLQSWVSRKFMTGCVVLFPVAVTFFITWW 73
P D V S PP P SP + + ++A + V++SW S+KFMTGCV+L P+AVTF+ TWW
Sbjct: 17 SGASPRDVVLSVPPSPLASPIHVAGKEAIYKVIRSWASKKFMTGCVILLPIAVTFYFTWW 76
Query: 74 FVKFVDGFFSPLYAKLGFDIFGLGFLTSLLFIFLVGIFVSSWVGSTVFWIGEWFIKKMPF 133
F+ FVDGFFSP+Y LG ++FGLGF+TS+ FIF+VG+F+SSW+G++V IGEWFIKKMP
Sbjct: 77 FIHFVDGFFSPIYTHLGINMFGLGFVTSITFIFMVGVFMSSWLGASVLSIGEWFIKKMPL 136
Query: 134 VRHIYSASKQVSTAVSPDQNTTAFKEVAIISHPRIGEYAFGFITSTMILQTDKGDEELCS 193
V +IYSASKQ+S A+SPDQ++ AFKEVAII HP +GEYAFGFITST+IL+ G EELC
Sbjct: 137 VSYIYSASKQISGAISPDQSSGAFKEVAIIRHPHMGEYAFGFITSTVILRGRAGGEELCC 196
Query: 194 VYVPTNHLYIGDIFLVRSEEIIRPNLSIREGIEIIVSGGMTMPQVIAA-PGQTPHK 248
VYVPTNHLY+GDIFL+ S++IIRPNLS+REGIEI++SGGM++P ++ +T H+
Sbjct: 197 VYVPTNHLYLGDIFLISSKDIIRPNLSVREGIEIVISGGMSIPHMLTTLDSETIHR 252
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,906,521
Number of extensions: 250332
Number of successful extensions: 1154
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 4
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 110 (47.0 bits)