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Os05g0428700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Potassium channel protein ZMK2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0244) R2 : 0.823
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.11 (0.063) R2dC : 0.435 R2C : 0.433
β3 : 1.66 (0.0581) R2dE : 0.326 R2E : 0.293
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.634 (0.0513) R2dN8 : 0.0757 R2N8 : 0.0497
σ : 0.457
deviance : 96.46
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_____
C
peak time of C : 7.41
E
wheather : humidity
threshold : 108
memory length : 621
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.3
open length of G : 1.72

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.43 0.449 10.9 -0.0241 2.13 1.39 1.67 0.0239 0.623 6.71 99.06 626 19.2 1.7
90.51 0.443 10.9 -0.0394 2.09 1.47 1.58 -- 0.638 7.03 105.3 621 19.3 1.7
97.45 0.46 10.9 -0.0519 2.11 1.44 -- 0.169 0.623 6.86 102.9 615 19.4 1.62
96.66 0.458 10.9 -0.0264 2.11 1.64 -- -- 0.651 7.28 107.3 622 19.3 1.63
147.96 0.567 10.8 0.187 -- 2.76 -- 3.88 0.795 -- 118.6 815 19.2 6.58
130.89 0.536 10.9 -0.0656 2.67 -- 1.88 -- 0.541 5.23 -- -- -- --
139.7 0.553 10.9 -0.0654 2.68 -- -- -- 0.532 5.18 -- -- -- --
114.25 0.498 11 -0.111 -- 3.87 -- -- 0.428 -- 125.1 655 18.4 11.4
96.46 0.457 10.9 -- 2.11 1.66 -- -- 0.634 7.41 108 621 19.3 1.72
515.2 1.06 10.9 0.029 -- -- -- -- 0.6 -- -- -- -- --
139.81 0.553 10.9 -- 2.68 -- -- -- 0.539 5.18 -- -- -- --
112.58 0.494 11 -- -- 3.83 -- -- 0.517 -- 128.2 656 18.3 11.6
515.22 1.06 10.9 -- -- -- -- -- 0.596 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.35 humidity 90.0 720 < th dose dependent rect. 19 2
2 104.12 humidity 90.0 720 > th dose dependent rect. 20 4
11 105.76 humidity 50.0 720 > th dose dependent rect. 21 4
15 106.02 temperature 10.0 90 > th dose dependent rect. 6 13
20 106.78 humidity 90.0 720 < th dose independent rect. 19 2
38 107.70 radiation 10.0 270 < th dose dependent rect. 17 12
49 107.95 humidity 90.0 720 > th dose dependent rect. 12 12
55 108.15 precipitation 0.1 720 < th dose independent rect. 18 11
56 108.15 precipitation 0.1 720 < th dose dependent rect. 18 11
57 108.19 temperature 10.0 10 > th dose dependent rect. 6 14
59 108.31 wind 9.0 90 < th dose independent rect. 6 13
65 108.46 precipitation 0.1 720 < th dose independent rect. 18 19
66 108.46 precipitation 0.1 720 < th dose dependent rect. 18 19
73 108.63 temperature 15.0 90 > th dose independent rect. 19 11
75 108.64 precipitation 0.1 720 < th dose independent rect. 18 3
76 108.64 precipitation 0.1 720 < th dose dependent rect. 18 3
77 108.75 humidity 90.0 720 > th dose independent rect. 21 3
98 109.35 precipitation 0.1 720 < th dose independent rect. 9 20
99 109.35 precipitation 0.1 720 < th dose dependent rect. 9 20
101 109.42 radiation 10.0 90 < th dose independent rect. 19 11
103 109.47 temperature 15.0 90 > th dose independent rect. 6 13
104 109.48 radiation 20.0 90 < th dose dependent rect. 19 11
118 109.69 temperature 30.0 270 < th dose independent rect. 17 12
127 109.78 temperature 30.0 90 < th dose independent rect. 19 11
128 109.78 humidity 50.0 90 > th dose independent rect. 19 11
130 109.78 atmosphere 995.0 90 > th dose independent rect. 19 11
135 109.78 atmosphere 1015.0 90 < th dose independent rect. 6 13
136 109.78 precipitation 0.1 90 < th dose independent rect. 6 13
138 109.78 precipitation 0.1 90 < th dose dependent rect. 6 13
139 109.81 temperature 10.0 720 > th dose dependent rect. 6 3
141 109.89 wind 5.0 720 < th dose independent rect. 6 3
142 109.89 humidity 60.0 270 > th dose independent rect. 17 12
146 109.95 radiation 10.0 270 < th dose independent rect. 17 12
147 109.95 wind 9.0 720 < th dose independent rect. 21 20
150 109.97 wind 9.0 90 < th dose independent rect. 19 11
154 110.04 precipitation 0.1 720 < th dose independent rect. 17 13
156 110.04 precipitation 0.1 720 < th dose dependent rect. 17 13
168 110.28 wind 9.0 720 < th dose independent rect. 6 11
176 110.37 precipitation 0.1 270 < th dose independent rect. 1 12
178 110.37 precipitation 0.1 270 < th dose dependent rect. 1 12
228 110.91 temperature 10.0 90 > th dose dependent rect. 5 22
259 111.25 precipitation 0.1 720 < th dose independent rect. 9 12
260 111.25 precipitation 0.1 720 < th dose dependent rect. 9 12
270 111.31 radiation 1.0 720 > th dose independent rect. 9 6
283 111.48 wind 9.0 270 < th dose independent rect. 13 12
288 111.59 wind 9.0 720 < th dose dependent rect. 6 3
295 111.70 precipitation 0.1 720 < th dose independent rect. 2 19
297 111.70 precipitation 0.1 720 < th dose dependent rect. 2 19
307 111.81 radiation 1.0 1440 < th dose dependent rect. 11 6
320 111.91 radiation 1.0 1440 > th dose independent rect. 12 1
328 111.98 wind 9.0 720 < th dose independent rect. 6 19
342 112.14 humidity 80.0 720 > th dose independent rect. 15 10
345 112.15 wind 1.0 720 > th dose independent rect. 17 4
359 112.22 humidity 70.0 10 > th dose independent rect. 19 11
427 112.63 precipitation 0.1 720 < th dose independent rect. 1 5
428 112.63 precipitation 0.1 720 < th dose dependent rect. 1 5
446 112.69 radiation 30.0 270 < th dose dependent sin 12 NA
466 112.81 temperature 30.0 720 < th dose independent rect. 2 10
479 112.90 temperature 15.0 720 > th dose independent rect. 5 4
490 112.99 radiation 20.0 720 < th dose dependent rect. 1 6
497 113.03 humidity 80.0 720 < th dose independent sin 16 NA
498 113.03 humidity 80.0 720 < th dose independent rect. 11 11
502 113.05 humidity 80.0 720 > th dose independent rect. 12 14
510 113.10 temperature 10.0 1440 > th dose independent rect. 20 11
513 113.10 temperature 30.0 1440 < th dose independent rect. 20 11
517 113.10 humidity 50.0 1440 > th dose independent rect. 20 11
522 113.10 atmosphere 995.0 1440 > th dose independent rect. 20 11
523 113.10 radiation 40.0 1440 < th dose independent rect. 20 11
527 113.10 temperature 10.0 1440 > th dose independent rect. 7 13
535 113.14 atmosphere 1005.0 90 > th dose independent rect. 11 19
536 113.16 atmosphere 1005.0 90 > th dose independent rect. 19 11
551 113.24 temperature 10.0 270 > th dose independent rect. 1 12
552 113.24 temperature 10.0 270 > th dose independent rect. 13 12
553 113.24 atmosphere 995.0 270 > th dose independent rect. 1 12
554 113.24 atmosphere 1015.0 270 < th dose independent rect. 1 12
559 113.27 humidity 50.0 720 > th dose independent rect. 5 4
560 113.27 atmosphere 995.0 720 > th dose independent rect. 5 4
561 113.27 atmosphere 1015.0 720 < th dose independent rect. 5 4
562 113.27 temperature 10.0 720 > th dose independent rect. 9 20
563 113.30 temperature 15.0 720 > th dose independent rect. 17 4
572 113.35 wind 9.0 720 < th dose independent rect. 13 4
576 113.37 humidity 80.0 720 < th dose independent rect. 11 14
579 113.38 precipitation 0.1 720 < th dose independent rect. 5 4
581 113.38 precipitation 0.1 720 < th dose dependent rect. 5 4
587 113.40 radiation 10.0 90 < th dose dependent rect. 19 14
591 113.43 radiation 1.0 1440 < th dose independent rect. 11 1
593 113.43 radiation 1.0 1440 < th dose dependent rect. 11 1
611 113.45 radiation 20.0 1440 < th dose independent rect. 20 10
641 113.54 temperature 10.0 270 > th dose dependent rect. 13 11
648 113.56 wind 1.0 90 > th dose independent rect. 6 13
651 113.56 temperature 10.0 90 > th dose dependent rect. 15 12
654 113.57 radiation 30.0 720 < th dose independent rect. 17 4
656 113.57 temperature 10.0 720 > th dose independent rect. 21 20
661 113.58 radiation 10.0 90 < th dose dependent rect. 19 18
725 113.81 temperature 30.0 270 < th dose independent rect. 8 21
744 113.90 radiation 1.0 1440 < th dose independent rect. 9 6
752 113.94 wind 9.0 720 < th dose independent rect. 17 4
753 113.94 wind 9.0 720 < th dose independent rect. 14 19
755 113.94 temperature 10.0 10 > th dose dependent rect. 16 11
817 114.09 precipitation 0.1 90 < th dose independent rect. 3 12
818 114.09 precipitation 0.1 90 < th dose dependent rect. 3 12
825 114.10 radiation 10.0 270 < th dose dependent rect. 8 21
838 114.15 temperature 30.0 720 < th dose independent rect. 9 3
852 114.20 atmosphere 995.0 720 > th dose independent rect. 18 3
873 114.23 temperature 30.0 90 < th dose independent rect. 11 19
880 114.26 radiation 10.0 720 < th dose independent rect. 1 6
883 114.27 wind 9.0 270 < th dose independent rect. 1 12
900 114.34 humidity 80.0 720 > th dose independent rect. 12 20
903 114.35 humidity 50.0 720 > th dose independent rect. 18 3
930 114.40 radiation 40.0 720 < th dose independent rect. 5 4
949 114.46 wind 7.0 90 < th dose independent rect. 15 12
950 114.46 atmosphere 995.0 90 > th dose independent rect. 6 13
960 114.49 humidity 80.0 720 > th dose independent rect. 14 18
964 114.50 wind 9.0 720 < th dose independent rect. 12 14
967 114.52 humidity 80.0 720 > th dose independent sin 15 NA
982 114.54 temperature 10.0 720 > th dose independent rect. 9 12