Os05g0422300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
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Os05g0422300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.55 | 0.419 | 8.55 | 0.385 | 0.351 | 0.842 | -0.593 | -2.37 | 0.12 | 4.77 | 25.8 | 96 | -- | -- |
| 81.16 | 0.42 | 8.52 | 0.612 | 0.351 | 0.692 | -0.262 | -- | 0.166 | 4.75 | 25.7 | 103 | -- | -- |
| 80.32 | 0.417 | 8.54 | 0.428 | 0.359 | 0.855 | -- | -1.91 | 0.135 | 4.6 | 25.9 | 97 | -- | -- |
| 81.33 | 0.42 | 8.52 | 0.627 | 0.341 | 0.679 | -- | -- | 0.18 | 4.68 | 25.8 | 98 | -- | -- |
| 84.06 | 0.429 | 8.54 | 0.518 | -- | 0.617 | -- | -2.02 | 0.174 | -- | 26.73 | 44 | -- | -- |
| 87.47 | 0.438 | 8.51 | 0.744 | 0.113 | -- | -0.657 | -- | 0.21 | 6.45 | -- | -- | -- | -- |
| 88.52 | 0.441 | 8.51 | 0.736 | 0.112 | -- | -- | -- | 0.213 | 7.18 | -- | -- | -- | -- |
| 85.12 | 0.432 | 8.51 | 0.686 | -- | 0.457 | -- | -- | 0.21 | -- | 26.73 | 44 | -- | -- |
| 91.49 | 0.445 | 8.53 | -- | 0.406 | 0.821 | -- | -- | 0.103 | 4.55 | 25.69 | 97 | -- | -- |
| 89.18 | 0.441 | 8.51 | 0.738 | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
| 102.8 | 0.474 | 8.53 | -- | 0.12 | -- | -- | -- | 0.131 | 6.78 | -- | -- | -- | -- |
| 90.2 | 0.442 | 8.56 | -- | -- | 0.754 | -- | -- | 0.0241 | -- | 3.434 | 4523 | -- | -- |
| 103.56 | 0.475 | 8.53 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 2 | 78.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 4 | 78.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 10 | 78.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 18 | 13 |
| 13 | 79.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 17 | 79.08 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 18 | 79.11 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 19 | 79.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 30 | 79.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 37 | 79.22 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 60 | 79.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 78 | 79.39 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 84 | 79.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 94 | 79.43 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 129 | 79.49 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 131 | 79.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 136 | 79.50 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 153 | 79.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 218 | 79.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 240 | 79.66 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 265 | 79.69 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 296 | 79.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 313 | 79.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 11 |
| 419 | 79.90 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 431 | 79.91 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 445 | 79.93 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 0 | NA |
| 454 | 79.94 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 467 | 79.95 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 17 | 15 |
| 517 | 80.01 | atmosphere | 1000 | 14400 | < th | dose independent | sin | 3 | NA |
| 548 | 80.05 | atmosphere | 1000 | 14400 | > th | dose independent | sin | 3 | NA |
| 560 | 80.06 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 14 |
| 576 | 80.07 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 645 | 80.13 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 2 |
| 654 | 80.13 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 727 | 80.22 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 754 | 80.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 22 | 9 |
| 873 | 80.33 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 892 | 80.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 953 | 80.39 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 975 | 80.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 13 |