BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0422300 Os05g0422300|AK111886
(164 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21651.1 | chr1:7601061-7604152 REVERSE LENGTH=812 167 3e-42
AT1G21650.3 | chr1:7592891-7604152 REVERSE LENGTH=1806 163 4e-41
AT1G49450.1 | chr1:18305684-18307099 FORWARD LENGTH=472 49 9e-07
>AT1G21651.1 | chr1:7601061-7604152 REVERSE LENGTH=812
Length = 811
Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 113/156 (72%)
Query: 6 GHKSTVSCLAVACGILYSGSWDGSIRSWWLTDHSPLSVLEDGTPGSITPVLSISTELDFV 65
GHKS VS L V G+LYSGSWDG++R W L+D+S L+VL + TPG + +LS++ + +
Sbjct: 653 GHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVLGEETPGIVRSILSLAADDQTL 712
Query: 66 VASYENGCLKIWKDDVLVKSEKLQNGAIYAAKLNDKWLYAGGWDKVVNIQELLEDDSEVE 125
VA+Y+NG ++IW+DD L+KS K+QNGAI + +N KWL+ GGWDK +N+QEL D+ V
Sbjct: 713 VAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWLFTGGWDKTINVQELSGDEISVN 772
Query: 126 IRDVATFTCDSIITSILYWDGRLIVGLSNREIKVFY 161
V + S+ITS+LYW+G+L G +++ IKV+Y
Sbjct: 773 CAHVGSIPGSSVITSLLYWEGKLFAGFADKTIKVYY 808
>AT1G21650.3 | chr1:7592891-7604152 REVERSE LENGTH=1806
Length = 1805
Score = 163 bits (412), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 110/153 (71%)
Query: 6 GHKSTVSCLAVACGILYSGSWDGSIRSWWLTDHSPLSVLEDGTPGSITPVLSISTELDFV 65
GHKS VS L V G+LYSGSWDG++R W L+D+S L+VL + TPG + +LS++ + +
Sbjct: 653 GHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVLGEETPGIVRSILSLAADDQTL 712
Query: 66 VASYENGCLKIWKDDVLVKSEKLQNGAIYAAKLNDKWLYAGGWDKVVNIQELLEDDSEVE 125
VA+Y+NG ++IW+DD L+KS K+QNGAI + +N KWL+ GGWDK +N+QEL D+ V
Sbjct: 713 VAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWLFTGGWDKTINVQELSGDEISVN 772
Query: 126 IRDVATFTCDSIITSILYWDGRLIVGLSNREIK 158
V + S+ITS+LYW+G+L G +++ IK
Sbjct: 773 CAHVGSIPGSSVITSLLYWEGKLFAGFADKTIK 805
>AT1G49450.1 | chr1:18305684-18307099 FORWARD LENGTH=472
Length = 471
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 7 HKSTVSCLAVA--CGILYSGSWDGSIRSWWLTDHSPLSVLEDGTPGSITPVLSISTELDF 64
H VSCL++ G+LYSGSWD +++ W L+D L +E T V D
Sbjct: 244 HFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFD---DL 300
Query: 65 VVASYENGCLKIWKDDVLVKSEKL--------QNGAIYAAKLN--DKWLYAGGWDKVVNI 114
V +G LK+WK +V K K Q A+ A +N D +Y G D VN
Sbjct: 301 VFTGSADGTLKVWKREVQGKEMKHVLVQVLMKQENAVTALAVNLTDAVVYCGSSDGTVNF 360
Query: 115 QE 116
E
Sbjct: 361 WE 362
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,815,376
Number of extensions: 152535
Number of successful extensions: 624
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 6
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)