FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0414400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF659 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.75 (0.0286) R2 : 0.37
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.65 (0.107) R2dE : 0.34 R2E : 0.357
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.167 (0.0609) R2dN8 : 0.0138 R2N8 : 0.0307
σ : 0.536
deviance : 132.31
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.27
memory length : 525
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.61 0.516 3.78 -0.304 0.51 1.46 0.358 -1.2 -0.212 19.7 30.32 401 -- --
120.23 0.511 3.78 -0.209 0.488 1.41 0.301 -- -0.196 19.7 30.6 506 -- --
120.33 0.511 3.77 -0.215 0.474 1.41 -- 0.0369 -0.198 19.6 30.4 516 -- --
120.32 0.511 3.77 -0.223 0.485 1.41 -- -- -0.201 19.5 30.46 517 -- --
130.3 0.532 3.76 -0.269 -- 1.65 -- 0.137 -0.225 -- 30.09 534 -- --
155.65 0.585 3.8 -0.0246 0.89 -- 1.27 -- -0.317 18.9 -- -- -- --
159.73 0.592 3.8 -0.0479 0.893 -- -- -- -0.314 19 -- -- -- --
130.31 0.532 3.76 -0.281 -- 1.66 -- -- -0.226 -- 30.08 534 -- --
121.61 0.514 3.76 -- 0.498 1.37 -- -- -0.183 19.5 30.41 515 -- --
201.61 0.663 3.78 -0.0661 -- -- -- -- -0.331 -- -- -- -- --
159.79 0.591 3.8 -- 0.893 -- -- -- -0.309 19 -- -- -- --
132.31 0.536 3.75 -- -- 1.65 -- -- -0.167 -- 30.27 525 -- --
201.72 0.663 3.78 -- -- -- -- -- -0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.11 temperature 30 270 > th dose independent rect. 14 21
2 121.31 temperature 30 270 < th dose independent rect. 7 23
8 122.05 temperature 30 720 < th dose independent rect. 3 8
9 122.13 temperature 30 270 > th dose independent sin 18 NA
12 122.26 temperature 30 270 < th dose independent sin 19 NA
13 122.27 temperature 30 720 > th dose dependent sin 7 NA
24 122.57 temperature 30 270 < th dose independent rect. 9 14
26 122.60 temperature 30 720 > th dose dependent rect. 8 5
40 122.61 temperature 30 270 < th dose independent rect. 20 23
62 122.99 temperature 30 720 > th dose independent rect. 8 5
94 123.12 temperature 25 270 > th dose dependent sin 17 NA
101 123.24 temperature 30 720 < th dose independent rect. 3 10
121 123.34 temperature 30 720 > th dose independent sin 7 NA
126 123.42 temperature 30 270 < th dose independent rect. 3 23
133 123.48 temperature 30 270 > th dose independent rect. 9 10
147 123.49 temperature 30 720 < th dose independent rect. 7 8
150 123.52 temperature 30 270 > th dose independent no NA NA
298 123.81 temperature 30 720 < th dose independent rect. 23 16
301 123.85 temperature 30 720 < th dose independent sin 7 NA
304 123.94 temperature 30 270 < th dose independent no NA NA
308 124.00 temperature 30 720 > th dose independent rect. 9 2
332 124.11 temperature 30 720 < th dose independent rect. 20 17
347 124.14 temperature 30 270 < th dose independent rect. 14 23
350 124.18 temperature 25 270 > th dose dependent rect. 13 20
353 124.21 temperature 30 270 > th dose independent rect. 14 4
356 124.25 temperature 30 720 < th dose independent rect. 3 12
470 124.63 temperature 25 270 > th dose dependent rect. 13 9
489 124.75 temperature 25 270 > th dose dependent rect. 13 12
603 125.51 temperature 30 720 > th dose dependent rect. 13 1
638 125.69 temperature 30 270 > th dose dependent rect. 15 22
660 125.83 temperature 30 270 < th dose independent rect. 7 11
671 125.95 temperature 25 10 > th dose dependent sin 13 NA
677 126.00 temperature 30 720 > th dose dependent no NA NA
831 126.31 temperature 30 720 < th dose independent rect. 11 2
908 126.67 atmosphere 1005 270 < th dose independent rect. 17 1
950 126.88 temperature 30 270 > th dose dependent sin 11 NA
960 127.00 temperature 30 270 > th dose independent rect. 17 1
993 127.18 temperature 25 30 > th dose dependent rect. 17 5