FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0406200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Inosine/uridine-preferring nucleoside hydrolase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0143) R2 : 0.00151
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0249 (0.03) R2dN8 : 0.00195 R2N8 : 0.00151
σ : 0.268
deviance : 33.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.08 0.26 3.14 -0.185 0.13 -0.724 -0.04 3.06 0.0408 7.08 1000 10 -- --
31.22 0.262 3.11 0.0186 0.128 -0.184 -0.0563 -- 0.0406 6.94 1000 10 -- --
31.09 0.262 3.14 -0.188 0.13 -0.729 -- 3.09 0.041 7.21 999.9 16 -- --
31.22 0.262 3.11 0.0178 0.128 -0.184 -- -- 0.0408 7.11 999.9 16 -- --
31.94 0.263 3.15 -0.184 -- -0.743 -- 3.14 0.0431 -- 999.8 17 -- --
32.14 0.266 3.11 0.0514 0.127 -- -0.0448 -- 0.0284 7.09 -- -- -- --
32.15 0.266 3.11 0.0507 0.127 -- -- -- 0.0286 7.24 -- -- -- --
32.08 0.265 3.11 0.0207 -- -0.186 -- -- 0.0428 -- 999.8 17 -- --
31.23 0.262 3.11 -- 0.128 -0.187 -- -- 0.0391 7.1 999.9 16 -- --
33 0.268 3.11 0.053 -- -- -- -- 0.0308 -- -- -- -- --
32.21 0.266 3.11 -- 0.128 -- -- -- 0.023 7.22 -- -- -- --
32.09 0.264 3.11 -- -- -0.19 -- -- 0.041 -- 999.8 19 -- --
33.08 0.268 3.12 -- -- -- -- -- 0.0249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.33 humidity 90.0 10 < th dose independent rect. 4 1
5 29.51 atmosphere 1005.0 10 > th dose dependent rect. 4 1
6 29.53 temperature 25.0 30 > th dose independent rect. 20 3
7 29.58 humidity 90.0 10 < th dose dependent rect. 4 1
9 29.64 temperature 25.0 90 > th dose dependent rect. 20 3
10 29.66 atmosphere 1000.0 30 > th dose independent rect. 23 23
11 29.67 wind 1.0 30 > th dose independent rect. 4 1
13 29.70 temperature 25.0 10 > th dose independent rect. 20 10
14 29.70 atmosphere 1000.0 720 > th dose independent rect. 21 14
22 29.84 atmosphere 1000.0 720 > th dose independent rect. 23 10
23 29.85 temperature 30.0 10 < th dose dependent rect. 4 1
25 29.86 wind 1.0 30 > th dose dependent rect. 4 1
27 29.88 atmosphere 1005.0 10 > th dose independent rect. 4 1
29 29.90 wind 3.0 10 < th dose independent rect. 4 1
33 29.91 temperature 25.0 10 > th dose independent rect. 4 1
34 29.91 temperature 25.0 90 > th dose dependent rect. 4 1
41 29.93 temperature 10.0 10 > th dose independent rect. 4 1
43 29.93 temperature 30.0 10 < th dose independent rect. 4 1
44 29.93 humidity 50.0 10 > th dose independent rect. 4 1
48 29.93 atmosphere 995.0 10 > th dose independent rect. 4 1
49 29.93 atmosphere 1010.0 10 < th dose independent rect. 4 1
51 29.93 radiation 1.0 10 < th dose independent rect. 4 1
57 29.93 temperature 10.0 10 > th dose independent rect. 5 23
58 29.93 radiation 1.0 10 < th dose dependent rect. 4 1
64 29.94 precipitation 0.1 10 < th dose independent rect. 4 1
65 29.94 precipitation 0.1 10 < th dose dependent rect. 4 1
67 29.95 wind 9.0 10 < th dose dependent rect. 4 1
103 30.01 humidity 50.0 10 > th dose dependent rect. 4 1
108 30.03 temperature 10.0 10 > th dose dependent rect. 4 1
115 30.05 atmosphere 1015.0 30 < th dose dependent rect. 4 1
126 30.09 atmosphere 1000.0 720 > th dose independent rect. 5 6
127 30.09 atmosphere 1005.0 30 > th dose dependent rect. 20 3
128 30.10 wind 7.0 1440 < th dose independent rect. 5 1
130 30.10 temperature 10.0 1440 > th dose independent rect. 5 1
133 30.10 temperature 30.0 1440 < th dose independent rect. 5 1
137 30.10 humidity 50.0 1440 > th dose independent rect. 5 1
146 30.10 atmosphere 995.0 1440 > th dose independent rect. 5 1
147 30.10 atmosphere 1015.0 1440 < th dose independent rect. 5 1
148 30.10 radiation 20.0 1440 < th dose independent rect. 5 1
158 30.10 temperature 10.0 1440 > th dose independent rect. 6 23
168 30.13 radiation 10.0 4320 < th dose dependent rect. 23 1
173 30.17 temperature 25.0 90 > th dose independent rect. 2 3
174 30.18 atmosphere 1000.0 30 > th dose independent rect. 23 21
177 30.19 radiation 40.0 43200 < th dose dependent rect. 23 1
191 30.26 atmosphere 995.0 720 > th dose independent rect. 23 16
194 30.27 wind 9.0 1440 < th dose independent rect. 23 1
195 30.27 temperature 10.0 1440 > th dose independent rect. 23 1
198 30.27 temperature 30.0 1440 < th dose independent rect. 23 1
202 30.27 humidity 80.0 30 > th dose independent rect. 22 1
203 30.27 humidity 50.0 1440 > th dose independent rect. 23 1
213 30.27 atmosphere 995.0 1440 > th dose independent rect. 23 1
214 30.27 radiation 1.0 1440 < th dose independent rect. 23 1
236 30.27 temperature 10.0 1440 > th dose independent rect. 24 23
245 30.28 temperature 25.0 30 > th dose independent rect. 22 1
246 30.28 atmosphere 995.0 720 > th dose independent rect. 11 10
248 30.28 atmosphere 995.0 720 > th dose independent rect. 9 14
252 30.29 atmosphere 1005.0 30 > th dose dependent rect. 22 1
253 30.30 atmosphere 1005.0 30 > th dose independent rect. 22 1
257 30.30 humidity 70.0 30 > th dose dependent rect. 22 1
262 30.31 wind 1.0 30 > th dose independent rect. 22 1
263 30.31 wind 3.0 30 < th dose independent rect. 22 1
268 30.31 humidity 50.0 30 > th dose dependent rect. 22 1
271 30.31 temperature 25.0 720 > th dose dependent rect. 5 3
275 30.32 temperature 10.0 30 > th dose independent rect. 22 1
277 30.32 temperature 30.0 30 < th dose independent rect. 22 1
278 30.32 humidity 50.0 30 > th dose independent rect. 22 1
282 30.32 atmosphere 1010.0 30 < th dose independent rect. 22 1
284 30.32 radiation 1.0 30 < th dose independent rect. 22 1
289 30.32 precipitation 0.1 30 < th dose independent rect. 22 1
292 30.32 temperature 10.0 30 > th dose independent rect. 23 23
293 30.32 wind 5.0 30 < th dose dependent rect. 22 1
296 30.32 temperature 10.0 30 > th dose dependent rect. 22 1
298 30.32 radiation 1.0 30 < th dose dependent rect. 22 1
303 30.32 precipitation 0.1 30 < th dose dependent rect. 22 1
307 30.33 humidity 90.0 30 < th dose independent rect. 22 1
315 30.35 atmosphere 995.0 720 > th dose independent rect. 1 22
316 30.35 atmosphere 1000.0 10 > th dose independent rect. 21 23
321 30.36 wind 9.0 30 < th dose independent rect. 5 23
325 30.37 atmosphere 1015.0 30 < th dose dependent rect. 22 1
331 30.38 wind 1.0 30 > th dose dependent rect. 22 1
332 30.38 temperature 30.0 30 < th dose dependent rect. 22 1
337 30.39 atmosphere 1000.0 90 > th dose independent rect. 23 12
342 30.40 precipitation 0.1 30 < th dose independent rect. 5 23
346 30.40 precipitation 0.1 30 < th dose dependent rect. 5 23
351 30.42 humidity 90.0 30 < th dose dependent rect. 22 1
352 30.42 temperature 25.0 90 > th dose dependent rect. 2 3
353 30.43 atmosphere 1000.0 720 > th dose independent rect. 3 8
361 30.45 humidity 90.0 10 < th dose independent rect. 3 20
368 30.46 humidity 60.0 720 > th dose independent rect. 23 10
372 30.47 precipitation 0.1 1440 < th dose independent rect. 23 1
373 30.47 precipitation 0.1 1440 < th dose dependent rect. 23 1
381 30.48 atmosphere 995.0 720 > th dose independent rect. 23 18
419 30.51 temperature 30.0 270 < th dose independent rect. 10 11
420 30.51 humidity 50.0 720 > th dose independent rect. 21 14
423 30.52 atmosphere 995.0 720 > th dose independent rect. 13 22
424 30.52 temperature 25.0 10 > th dose dependent rect. 20 9
427 30.53 atmosphere 1000.0 30 > th dose independent rect. 5 23
449 30.57 atmosphere 1000.0 720 > th dose independent rect. 11 2
451 30.57 temperature 10.0 720 > th dose independent rect. 23 10
454 30.57 temperature 10.0 720 > th dose independent rect. 9 14
458 30.57 temperature 25.0 90 > th dose dependent rect. 20 9
462 30.58 wind 9.0 720 < th dose independent rect. 23 10
463 30.58 temperature 10.0 720 > th dose independent rect. 11 10
464 30.58 temperature 10.0 720 > th dose independent rect. 21 14
467 30.58 radiation 1.0 90 < th dose dependent rect. 2 21
469 30.60 atmosphere 1015.0 720 < th dose independent rect. 11 10
470 30.60 atmosphere 1000.0 270 > th dose independent rect. 20 23
471 30.60 precipitation 0.1 30 < th dose independent rect. 23 23
475 30.60 humidity 80.0 14400 < th dose dependent rect. 2 7
477 30.60 precipitation 0.1 30 < th dose dependent rect. 23 23
479 30.61 temperature 30.0 720 < th dose independent rect. 23 10
480 30.61 atmosphere 1000.0 90 > th dose independent rect. 11 12
481 30.61 precipitation 0.1 720 < th dose independent rect. 9 14
485 30.61 precipitation 0.1 720 < th dose dependent rect. 9 14
488 30.62 temperature 30.0 720 < th dose independent rect. 17 6
520 30.65 temperature 25.0 720 > th dose independent rect. 5 4
521 30.65 wind 9.0 720 < th dose independent rect. 17 6
522 30.65 temperature 25.0 10 > th dose independent rect. 22 8
536 30.66 temperature 10.0 720 > th dose independent rect. 11 2
538 30.66 atmosphere 1015.0 720 < th dose independent rect. 11 2
539 30.66 precipitation 0.1 720 < th dose independent rect. 11 2
542 30.66 precipitation 0.1 720 < th dose independent rect. 11 10
544 30.66 temperature 10.0 720 > th dose independent rect. 13 22
545 30.66 wind 9.0 14400 > th dose dependent rect. 13 1
548 30.66 precipitation 0.1 720 < th dose dependent rect. 11 2
551 30.66 precipitation 0.1 720 < th dose dependent rect. 11 10
552 30.67 temperature 30.0 270 < th dose independent rect. 1 13
553 30.67 wind 9.0 30 < th dose independent rect. 23 23
563 30.68 atmosphere 995.0 10 > th dose independent rect. 10 10
564 30.68 precipitation 0.1 720 < th dose independent rect. 23 10
566 30.68 atmosphere 1000.0 30 > th dose independent rect. 10 23
571 30.68 precipitation 0.1 720 < th dose dependent rect. 23 10
576 30.69 atmosphere 1000.0 10 < th dose independent rect. 7 20
587 30.70 wind 9.0 720 < th dose independent rect. 21 14
594 30.71 wind 1.0 720 > th dose independent rect. 11 2
595 30.71 wind 9.0 720 < th dose independent rect. 11 2
605 30.72 atmosphere 1005.0 30 > th dose independent rect. 20 3
607 30.72 radiation 1.0 90 < th dose independent rect. 2 21
611 30.73 humidity 80.0 30 > th dose independent rect. 20 3
612 30.73 atmosphere 1000.0 270 > th dose independent rect. 14 11
623 30.73 humidity 80.0 14400 < th dose dependent rect. 21 13
624 30.73 atmosphere 995.0 30 > th dose dependent rect. 23 21
629 30.74 radiation 20.0 720 < th dose independent rect. 17 6
630 30.74 precipitation 0.1 720 < th dose independent rect. 15 8
631 30.74 wind 7.0 720 < th dose independent rect. 17 12
638 30.74 precipitation 0.1 720 < th dose dependent rect. 15 8
652 30.76 precipitation 0.1 720 < th dose independent rect. 17 6
653 30.76 precipitation 0.1 720 < th dose independent rect. 11 18
657 30.76 precipitation 0.1 720 < th dose dependent rect. 17 6
660 30.76 precipitation 0.1 720 < th dose dependent rect. 11 18
667 30.78 temperature 30.0 720 < th dose independent rect. 11 2
668 30.78 humidity 90.0 30 < th dose independent rect. 20 3
669 30.78 humidity 50.0 720 > th dose independent rect. 5 6
670 30.78 wind 1.0 720 > th dose independent rect. 11 10
673 30.78 wind 1.0 720 > th dose independent rect. 9 14
679 30.79 humidity 50.0 720 > th dose independent rect. 17 6
692 30.80 radiation 40.0 720 < th dose dependent rect. 17 6
697 30.81 atmosphere 1000.0 10 > th dose independent rect. 23 13
699 30.81 precipitation 0.1 720 < th dose independent rect. 11 16
704 30.81 precipitation 0.1 720 < th dose dependent rect. 11 16
707 30.82 temperature 10.0 720 > th dose independent rect. 17 6
708 30.82 atmosphere 995.0 720 > th dose independent rect. 17 6
711 30.82 temperature 10.0 720 > th dose independent rect. 15 8
713 30.82 wind 9.0 720 < th dose independent rect. 11 10
717 30.82 temperature 10.0 720 > th dose independent rect. 23 16
718 30.82 temperature 10.0 720 > th dose independent rect. 23 18
725 30.83 humidity 50.0 720 > th dose independent rect. 11 2
730 30.83 temperature 10.0 720 > th dose independent rect. 5 6
732 30.83 atmosphere 1015.0 720 < th dose independent rect. 5 6
734 30.83 temperature 10.0 720 > th dose independent rect. 11 18
739 30.83 precipitation 0.1 720 < th dose independent rect. 1 22
745 30.83 precipitation 0.1 720 < th dose dependent rect. 1 22
746 30.84 wind 1.0 720 > th dose independent rect. 23 2
748 30.84 precipitation 0.1 720 < th dose independent rect. 21 14
756 30.84 precipitation 0.1 720 < th dose dependent rect. 21 14
757 30.85 temperature 25.0 720 > th dose independent rect. 8 1
760 30.85 wind 9.0 720 < th dose independent rect. 5 6
768 30.85 humidity 50.0 720 > th dose dependent rect. 23 2
773 30.85 atmosphere 1000.0 10 < th dose dependent rect. 7 20
774 30.86 humidity 60.0 4320 > th dose independent rect. 11 1
777 30.86 precipitation 0.1 720 < th dose independent rect. 5 6
778 30.86 temperature 10.0 720 > th dose independent rect. 3 8
780 30.86 humidity 50.0 90 > th dose independent rect. 23 12
781 30.86 temperature 10.0 720 > th dose independent rect. 11 16
784 30.86 wind 9.0 720 < th dose independent rect. 1 22
785 30.86 humidity 50.0 30 > th dose independent rect. 23 23
788 30.86 precipitation 0.1 720 < th dose dependent rect. 5 6
791 30.86 radiation 1.0 10 < th dose dependent rect. 4 10
794 30.87 wind 3.0 14400 > th dose independent rect. 19 1
797 30.87 temperature 30.0 4320 < th dose independent rect. 3 6
799 30.87 temperature 10.0 90 > th dose independent rect. 11 12
800 30.87 temperature 10.0 90 > th dose independent rect. 23 12
803 30.87 wind 9.0 720 < th dose independent rect. 9 14
806 30.87 wind 9.0 720 < th dose independent rect. 17 20
810 30.87 wind 1.0 14400 < th dose dependent rect. 6 1
820 30.88 humidity 60.0 4320 < th dose independent rect. 11 2
821 30.88 radiation 1.0 10 < th dose independent rect. 4 10
842 30.89 wind 9.0 90 < th dose independent rect. 23 12
844 30.89 temperature 30.0 1440 < th dose independent rect. 15 20
847 30.89 wind 5.0 14400 < th dose dependent rect. 11 1
851 30.89 temperature 25.0 30 > th dose dependent rect. 24 11
857 30.90 precipitation 0.1 1440 < th dose independent rect. 21 3
859 30.90 temperature 30.0 90 < th dose independent rect. 23 12
860 30.90 precipitation 0.1 90 < th dose independent rect. 23 12
861 30.90 temperature 30.0 720 < th dose independent rect. 17 20
862 30.90 atmosphere 995.0 720 > th dose independent rect. 17 20
863 30.90 atmosphere 1000.0 30 > th dose independent rect. 5 21
864 30.90 atmosphere 995.0 720 > th dose independent rect. 5 21
873 30.90 precipitation 0.1 1440 < th dose dependent rect. 21 3
877 30.90 precipitation 0.1 90 < th dose dependent rect. 23 12
880 30.91 wind 5.0 30 < th dose independent rect. 20 3
881 30.91 atmosphere 995.0 720 > th dose independent rect. 13 6
882 30.91 wind 9.0 720 < th dose independent rect. 3 8
883 30.91 atmosphere 1015.0 90 < th dose independent rect. 11 12
885 30.91 atmosphere 995.0 720 > th dose independent rect. 7 18
886 30.91 atmosphere 1000.0 90 > th dose independent rect. 11 18
888 30.91 temperature 30.0 1440 > th dose independent rect. 15 20
891 30.91 wind 1.0 14400 < th dose dependent rect. 2 1
907 30.92 precipitation 0.1 720 < th dose independent rect. 13 4
908 30.92 atmosphere 1000.0 720 > th dose independent rect. 21 5
909 30.92 humidity 70.0 14400 > th dose independent rect. 4 6
911 30.92 wind 9.0 720 < th dose independent rect. 15 8
912 30.92 humidity 70.0 14400 > th dose independent rect. 1 9
914 30.92 humidity 70.0 14400 > th dose independent rect. 22 12
918 30.92 wind 1.0 90 > th dose independent rect. 1 22
922 30.92 temperature 30.0 14400 > th dose dependent rect. 8 1
932 30.92 precipitation 0.1 720 < th dose dependent rect. 13 4
944 30.93 wind 3.0 14400 < th dose independent rect. 19 1
946 30.93 humidity 70.0 14400 > th dose independent rect. 7 3
952 30.93 humidity 50.0 720 > th dose independent rect. 3 8
956 30.93 precipitation 0.1 90 < th dose independent rect. 11 12
958 30.93 wind 9.0 720 < th dose independent rect. 17 14
971 30.93 precipitation 0.1 90 < th dose dependent rect. 11 12
977 30.94 humidity 70.0 14400 < th dose independent rect. 8 2
994 30.94 atmosphere 1000.0 10 > th dose independent rect. 8 12
996 30.94 precipitation 0.1 720 < th dose independent rect. 23 18