Os05g0405000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Orthophosphate dikinase precursor (EC 2.7.9.1).
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Os05g0405000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Orthophosphate dikinase precursor (EC 2.7.9.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.17 | 0.405 | 14.9 | -0.401 | 2 | -0.708 | 1.79 | 0.746 | -0.0798 | 7.19 | 2.7 | 653 | -- | -- |
| 74.85 | 0.403 | 14.9 | -0.396 | 1.97 | -0.623 | 2.02 | -- | -0.0696 | 7.17 | 2.805 | 645 | -- | -- |
| 80.51 | 0.418 | 14.9 | -0.412 | 2.08 | -0.769 | -- | 1.71 | -0.08 | 7.21 | 3.303 | 607 | -- | -- |
| 85.15 | 0.43 | 14.9 | -0.363 | 1.98 | -0.659 | -- | -- | -0.0651 | 7.18 | 3.6 | 647 | -- | -- |
| 193.04 | 0.647 | 14.9 | -0.872 | -- | 1.36 | -- | 0.584 | 0.0998 | -- | 4.854 | 320 | -- | -- |
| 81.2 | 0.422 | 14.9 | -0.568 | 1.75 | -- | 2 | -- | 0.0144 | 7.04 | -- | -- | -- | -- |
| 91.54 | 0.448 | 14.9 | -0.531 | 1.76 | -- | -- | -- | 0.00886 | 6.94 | -- | -- | -- | -- |
| 193.89 | 0.649 | 14.9 | -0.892 | -- | 1.37 | -- | -- | 0.101 | -- | 4.758 | 320 | -- | -- |
| 88.24 | 0.437 | 14.9 | -- | 2.06 | -0.787 | -- | -- | -0.058 | 7.18 | 3.623 | 639 | -- | -- |
| 253.48 | 0.744 | 15 | -0.495 | -- | -- | -- | -- | 0.0417 | -- | -- | -- | -- | -- |
| 98.97 | 0.465 | 14.9 | -- | 1.75 | -- | -- | -- | 0.068 | 6.96 | -- | -- | -- | -- |
| 213.48 | 0.681 | 14.9 | -- | -- | 1.17 | -- | -- | 0.183 | -- | 4.7 | 329 | -- | -- |
| 259.94 | 0.753 | 14.9 | -- | -- | -- | -- | -- | 0.0965 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.35 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 3 | 67.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 18 |
| 7 | 67.89 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 20 |
| 10 | 68.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 26 | 68.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 27 | 68.97 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 33 | 69.11 | wind | 7.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 34 | 69.15 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 38 | 69.28 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 6 |
| 52 | 69.55 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 59 | 69.61 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 67 | 69.70 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 78 | 69.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 91 | 69.98 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 95 | 70.02 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 97 | 70.03 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 2 |
| 112 | 70.12 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 113 | 70.12 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 116 | 70.15 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 129 | 70.27 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 145 | 70.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 151 | 70.39 | wind | 9.0 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 165 | 70.51 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 18 |
| 174 | 70.56 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 189 | 70.62 | humidity | 90.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 194 | 70.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 195 | 70.64 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 214 | 70.71 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 4 |
| 218 | 70.73 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 222 | 70.74 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 6 |
| 251 | 70.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 279 | 71.02 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 284 | 71.05 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 8 | 6 |
| 294 | 71.10 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 2 | 8 |
| 306 | 71.17 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 2 |
| 317 | 71.21 | temperature | 20.0 | 10 | > th | dose independent | rect. | 10 | 16 |
| 324 | 71.24 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 8 | 6 |
| 328 | 71.24 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 329 | 71.25 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 14 |
| 334 | 71.25 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 19 | 21 |
| 336 | 71.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 17 |
| 338 | 71.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 343 | 71.28 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 19 | 7 |
| 352 | 71.31 | humidity | 70.0 | 10 | > th | dose independent | rect. | 14 | 5 |
| 356 | 71.32 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 357 | 71.32 | temperature | 15.0 | 10 | > th | dose independent | rect. | 19 | 7 |
| 370 | 71.35 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 389 | 71.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 395 | 71.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 401 | 71.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 406 | 71.43 | radiation | 40.0 | 270 | < th | dose independent | rect. | 19 | 18 |
| 433 | 71.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 436 | 71.50 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 438 | 71.52 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 1 |
| 446 | 71.54 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 450 | 71.55 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 10 | 4 |
| 456 | 71.55 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 459 | 71.56 | temperature | 15.0 | 10 | > th | dose independent | rect. | 19 | 19 |
| 465 | 71.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 468 | 71.58 | humidity | 90.0 | 10 | < th | dose independent | rect. | 19 | 18 |
| 481 | 71.62 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 484 | 71.62 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 19 | 19 |
| 493 | 71.64 | temperature | 30.0 | 10 | < th | dose independent | rect. | 16 | 3 |
| 518 | 71.72 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 523 | 71.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 550 | 71.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 552 | 71.79 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 10 | 4 |
| 556 | 71.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 7 |
| 560 | 71.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 565 | 71.82 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 2 | 8 |
| 568 | 71.82 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 574 | 71.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 575 | 71.83 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 20 |
| 579 | 71.83 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 20 |
| 591 | 71.86 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 598 | 71.88 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 18 | 7 |
| 600 | 71.88 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 625 | 71.92 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 19 | 21 |
| 636 | 71.94 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 19 | 7 |
| 659 | 71.98 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 734 | 72.09 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 3 | 16 |
| 750 | 72.12 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 764 | 72.16 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 2 |
| 781 | 72.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 9 |
| 783 | 72.18 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 19 | 19 |
| 787 | 72.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 790 | 72.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 818 | 72.24 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 831 | 72.25 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 862 | 72.29 | atmosphere | 995.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 868 | 72.30 | wind | 1.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 892 | 72.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 894 | 72.34 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 899 | 72.34 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 18 |
| 923 | 72.36 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 937 | 72.38 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 942 | 72.38 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 946 | 72.38 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 947 | 72.38 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 968 | 72.40 | humidity | 90.0 | 90 | < th | dose independent | rect. | 10 | 15 |
| 985 | 72.42 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 3 |