BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0405000 Os05g0405000|D87745
         (947 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15530.5  | chr4:8864828-8870748 REVERSE LENGTH=964           1495   0.0  

>AT4G15530.5 | chr4:8864828-8870748 REVERSE LENGTH=964
          Length = 963

 Score = 1495 bits (3870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 708/887 (79%), Positives = 798/887 (89%), Gaps = 3/887 (0%)

Query: 61  SPLRAVAAPIPTTKKRVFHFGKGKSEGNKAMKDLLGGKGANLAEMASIGLSVPPGFTVST 120
           SP+   AA I   +KRVF FGKG+SEGNK MK LLGGKGANLAEMASIGLSVPPG T+ST
Sbjct: 79  SPVSDPAASI--AQKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMASIGLSVPPGLTIST 136

Query: 121 EACQQYQAAGKTLPAGLWEEIVEGLQWVEEYMAARLGDPARPLLLSVRSGAAVSMPGMMD 180
           EACQQYQ AGK LP GLWEEI+EGL ++E  + A L DP++PLLLSVRSGAA+SMPGMMD
Sbjct: 137 EACQQYQIAGKKLPEGLWEEILEGLSFIERDIGASLADPSKPLLLSVRSGAAISMPGMMD 196

Query: 181 TVLNLGLNDEVAAGLAAKSGDRFAYDSYRRFLDMFGNVVMDIPHALFEEKLEAMKAVKGL 240
           TVLNLGLND+V  GLAAKSG+RFAYDS+RRFLDMFG+VVM IPHA FEEKLE MK  KG+
Sbjct: 197 TVLNLGLNDQVVVGLAAKSGERFAYDSFRRFLDMFGDVVMGIPHAKFEEKLERMKERKGV 256

Query: 241 HNDTDLTATDLKELVAQYKDVYVEAKGEPFPSDPKKQLQLAVLAVFNSWDSPRAIKYRSI 300
            NDTDL+A DLKELV QYK VY+EAKG+ FPSDPKKQL+LA+ AVF+SWDSPRA KYRSI
Sbjct: 257 KNDTDLSAADLKELVEQYKSVYLEAKGQEFPSDPKKQLELAIEAVFDSWDSPRANKYRSI 316

Query: 301 NKITGLKGTAVNVQTMVFGNMGNTSGTGVLFTRNPSTGEKKLYGEFLVNAQGEDVVAGIR 360
           N+ITGLKGTAVN+Q MVFGNMG+TSGTGVLFTRNPSTGEKKLYGEFLVNAQGEDVVAGIR
Sbjct: 317 NQITGLKGTAVNIQCMVFGNMGDTSGTGVLFTRNPSTGEKKLYGEFLVNAQGEDVVAGIR 376

Query: 361 TPEDLDAMRDHMPEPYEELVENCKILESHYKEMMDIEFTVQENRLWMLQCRTGKRTGKGA 420
           TPEDLD M+  MPE Y ELVENC ILE HYK+MMDIEFTVQE RLWMLQCR GKRTGKGA
Sbjct: 377 TPEDLDTMKRFMPEAYAELVENCNILERHYKDMMDIEFTVQEERLWMLQCRAGKRTGKGA 436

Query: 421 VKIAVDMVNEGLVERRTALKMVEPGHLDQLLHPQFENPSGYKDKVIATGLPASPGAAVGQ 480
           VKIAVDMV EGLVE+ +A+KMVEP HLDQLLHPQF +PSGY++KV+A GLPASPGAAVGQ
Sbjct: 437 VKIAVDMVGEGLVEKSSAIKMVEPQHLDQLLHPQFHDPSGYREKVVAKGLPASPGAAVGQ 496

Query: 481 IVFTAEDAEAWHAQGKDVILVRTETSPEDVGGMHAAVGILTARGGMTSHAAVVARGWGKC 540
           +VFTAE+AEAWH+QGK VILVRTETSP+DVGGMHAA GILTARGGMTSHAAVVARGWGKC
Sbjct: 497 VVFTAEEAEAWHSQGKTVILVRTETSPDDVGGMHAAEGILTARGGMTSHAAVVARGWGKC 556

Query: 541 CVSGCSSVRVNDASKIVVIEDKALHEGEWLSLNGSTGEVIIGKQPLCPPALSGDLETFMS 600
           C++GCS +RV++  K+++I D  ++EGEW+S+NGSTGEVI+GKQ L PPALS DLETFMS
Sbjct: 557 CIAGCSEIRVDENHKVLLIGDLTINEGEWISMNGSTGEVILGKQALAPPALSPDLETFMS 616

Query: 601 WVDEVRKLKVMANADTPEDATTARQNGAEGIGLCRTEHMFFASDERIKAVRQMIMASSLE 660
           W D +R+LKVMANADTPEDA  AR+NGA+GIGLCRTEHMFF +D RIKAVR+MIMA + E
Sbjct: 617 WADAIRRLKVMANADTPEDAIAARKNGAQGIGLCRTEHMFFGAD-RIKAVRKMIMAVTTE 675

Query: 661 LRQKALDRLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGHVEDMVRELCSETGA 720
            R+ +LD LLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEG ++++V EL  ETG 
Sbjct: 676 QRKASLDILLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLDNIVHELAEETGV 735

Query: 721 AQDDVLARVEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFEAAITMTNQGIQVFPEIM 780
            +D+VL+R+EKLSEVNPMLGFRGCRLGISYPELTEMQARAIFEAA +M +QG+ V PEIM
Sbjct: 736 KEDEVLSRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFEAAASMQDQGVTVIPEIM 795

Query: 781 VPLVGTPQELGHQVDVIRQIANKVFTDMGKTIGYKVGTMIEIPRAALVADEIAEQAEFFS 840
           VPLVGTPQELGHQVDVIR++A KVF + G T+ YKVGTMIEIPRAAL+ADEIA++AEFFS
Sbjct: 796 VPLVGTPQELGHQVDVIRKVAKKVFAEKGHTVSYKVGTMIEIPRAALIADEIAKEAEFFS 855

Query: 841 FGTNDLTQMTFGYSRDDVGKFLPIYLSQGILQHDPFEVLDQRGVGELVKLATERGRKARP 900
           FGTNDLTQMTFGYSRDDVGKFLPIYL++GILQHDPFEVLDQ+GVG+L+K+ATE+GR ARP
Sbjct: 856 FGTNDLTQMTFGYSRDDVGKFLPIYLAKGILQHDPFEVLDQQGVGQLIKMATEKGRAARP 915

Query: 901 NLKVGICGEHGGEPLSVAFFAKAGLDYVSCSPFRVPIARLAAAQVLL 947
           +LKVGICGEHGG+P SV FFA+AGLDYVSCSPFRVPIARLAAAQV++
Sbjct: 916 SLKVGICGEHGGDPSSVGFFAEAGLDYVSCSPFRVPIARLAAAQVVV 962



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,735,450
Number of extensions: 838311
Number of successful extensions: 1982
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1981
Number of HSP's successfully gapped: 1
Length of query: 947
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 839
Effective length of database: 8,145,641
Effective search space: 6834192799
Effective search space used: 6834192799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)