FiT-DB / Search/ Help/ Sample detail

Os05g0401100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF477 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.4 (0.0227) R2 : 0.483
β1 : -1.58 (0.0832) R2dD : 0.423 R2D : 0.279
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.562 (0.0485) R2dN8 : 0.204 R2N8 : 0.0595
σ : 0.426
deviance : 83.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.45 0.35 14.4 -1.48 0.497 -0.098 0.713 -2.94 -0.525 0.528 1000 10 -- --
56.57 0.353 14.4 -1.68 0.494 -0.618 0.703 -- -0.525 0.533 1000 10 -- --
58.56 0.359 14.4 -1.55 0.494 -0.213 -- -2.25 -0.528 0.278 999.9 25 -- --
58.08 0.355 14.4 -1.69 0.496 -0.603 -- -- -0.524 0.367 1000 20 -- --
73.82 0.402 14.4 -1.7 -- -0.627 -- 0.241 -0.522 -- 999.9 33 -- --
67.03 0.384 14.4 -1.57 0.479 -- 0.658 -- -0.566 0.469 -- -- -- --
68.84 0.389 14.4 -1.59 0.478 -- -- -- -0.569 0.224 -- -- -- --
73.62 0.4 14.4 -1.67 -- -0.586 -- -- -0.519 -- 1000 15 -- --
130.17 0.534 14.4 -- 0.473 -0.351 -- -- -0.34 0.134 1003 7 -- --
83.21 0.426 14.4 -1.58 -- -- -- -- -0.562 -- -- -- -- --
135.71 0.545 14.4 -- 0.456 -- -- -- -0.391 0.036 -- -- -- --
143.99 0.561 14.3 -- -- -0.338 -- -- -0.34 -- 1002 12 -- --
148.82 0.569 14.4 -- -- -- -- -- -0.387 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.32 wind 1 14400 < th dose independent rect. 9 3
2 54.36 wind 1 43200 < th dose dependent rect. 10 1
4 54.46 wind 1 43200 < th dose independent rect. 10 1
5 54.49 atmosphere 1015 270 < th dose dependent rect. 7 18
6 54.70 wind 1 14400 < th dose dependent rect. 9 3
9 54.73 atmosphere 1000 10 > th dose independent rect. 1 23
11 54.81 wind 1 14400 > th dose independent rect. 9 4
12 54.86 wind 1 43200 > th dose independent rect. 10 1
13 54.87 atmosphere 1000 270 > th dose independent rect. 10 21
15 54.94 atmosphere 995 270 > th dose dependent rect. 1 17
16 54.96 atmosphere 1015 10 < th dose dependent rect. 8 17
35 55.54 humidity 80 14400 < th dose dependent rect. 19 12
45 55.76 atmosphere 1000 270 > th dose independent rect. 1 17
46 55.79 humidity 80 14400 > th dose independent rect. 19 11
50 55.82 atmosphere 1000 10 > th dose independent rect. 12 20
55 55.92 atmosphere 1000 10 > th dose independent rect. 9 23
57 55.93 humidity 80 14400 < th dose independent rect. 19 11
62 55.98 atmosphere 1000 10 > th dose independent rect. 11 23
69 56.05 atmosphere 1015 270 < th dose dependent rect. 19 18
79 56.14 humidity 80 14400 < th dose dependent rect. 20 6
82 56.15 atmosphere 1000 90 > th dose independent rect. 4 15
83 56.15 atmosphere 1000 10 > th dose independent rect. 7 23
88 56.18 atmosphere 1000 30 > th dose independent rect. 3 23
102 56.24 atmosphere 1000 10 < th dose independent rect. 18 22
129 56.34 atmosphere 1000 270 > th dose independent rect. 22 22
136 56.38 wind 9 14400 > th dose dependent rect. 13 1
139 56.40 atmosphere 1000 10 < th dose independent rect. 7 23
140 56.41 atmosphere 1015 270 < th dose dependent rect. 6 7
143 56.42 atmosphere 1000 30 > th dose independent rect. 15 23
144 56.42 atmosphere 1000 10 < th dose independent rect. 5 23
146 56.43 atmosphere 1000 10 < th dose independent rect. 9 23
148 56.43 wind 1 43200 < th dose dependent rect. 2 3
151 56.44 atmosphere 1000 10 < th dose independent rect. 23 23
152 56.45 atmosphere 1000 10 > th dose independent no NA NA
154 56.45 atmosphere 1000 10 < th dose independent no NA NA
155 56.45 humidity 80 14400 < th dose independent rect. 20 7
157 56.45 atmosphere 1000 10 < th dose independent rect. 21 23
168 56.47 atmosphere 1000 10 < th dose independent rect. 11 23
174 56.48 atmosphere 1000 30 < th dose independent rect. 1 23
175 56.48 atmosphere 1000 30 < th dose independent rect. 3 23
177 56.48 atmosphere 1000 10 < th dose independent rect. 15 23
186 56.51 wind 1 43200 < th dose independent rect. 2 2
189 56.51 atmosphere 1000 10 > th dose independent rect. 13 23
192 56.51 atmosphere 1000 30 < th dose independent rect. 13 23
223 56.60 wind 1 43200 > th dose independent rect. 2 2
238 56.67 atmosphere 1000 30 > th dose independent rect. 21 23
254 56.70 atmosphere 1000 30 > th dose independent rect. 17 23
338 56.88 wind 9 14400 > th dose independent rect. 13 1
421 57.07 atmosphere 1005 10 < th dose dependent rect. 18 22
445 57.11 humidity 80 14400 < th dose dependent rect. 21 1
471 57.16 atmosphere 995 270 > th dose dependent rect. 10 21
488 57.21 atmosphere 1000 10 > th dose independent rect. 5 23
498 57.22 radiation 40 14400 > th dose dependent rect. 12 1
502 57.23 wind 9 14400 < th dose independent rect. 13 1
516 57.25 wind 9 14400 > th dose dependent rect. 15 1
529 57.28 atmosphere 1000 90 > th dose independent rect. 3 20
542 57.30 humidity 80 14400 < th dose independent sin 11 NA
561 57.33 atmosphere 1000 30 > th dose independent rect. 1 20
589 57.37 humidity 80 14400 > th dose independent sin 11 NA
605 57.39 atmosphere 995 10 > th dose dependent rect. 1 23
657 57.49 wind 9 14400 > th dose independent rect. 15 1
684 57.54 humidity 90 14400 < th dose dependent rect. 1 1
697 57.56 humidity 80 14400 < th dose independent rect. 21 1
724 57.59 radiation 1 14400 > th dose dependent rect. 12 1
755 57.65 radiation 40 14400 > th dose independent rect. 12 1
760 57.66 radiation 10 14400 < th dose independent rect. 13 1
768 57.67 radiation 20 14400 < th dose dependent rect. 13 1
773 57.67 atmosphere 1005 10 < th dose dependent rect. 5 23
774 57.68 radiation 10 14400 > th dose independent rect. 13 1
778 57.68 atmosphere 1005 10 < th dose dependent rect. 7 23
789 57.69 atmosphere 1005 10 < th dose dependent rect. 21 23
795 57.70 atmosphere 1005 10 < th dose dependent rect. 9 23
797 57.71 radiation 40 14400 < th dose independent rect. 12 1
808 57.72 atmosphere 1005 10 < th dose dependent no NA NA
809 57.72 humidity 80 14400 < th dose dependent rect. 4 1
813 57.72 atmosphere 1005 10 < th dose dependent rect. 23 23
836 57.75 atmosphere 1005 10 < th dose dependent rect. 3 23
846 57.76 atmosphere 1005 10 < th dose dependent rect. 15 23
850 57.77 atmosphere 1005 10 < th dose dependent rect. 1 23
856 57.78 atmosphere 1000 720 > th dose independent rect. 18 21
863 57.79 atmosphere 1015 90 < th dose dependent rect. 23 14
881 57.80 atmosphere 1005 10 < th dose dependent rect. 11 23
961 57.86 atmosphere 1005 10 < th dose dependent rect. 13 23
963 57.87 radiation 10 14400 > th dose independent rect. 6 1
982 57.88 wind 9 14400 > th dose dependent rect. 3 13